FC932130

Overview
NameFC932130
Unique NameFC932130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4275 contig Ccv1_Contig4275:626..1313. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.945e-45
Identity = 92/179 (51.40%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L+ +L +A IMVVSVTASTT G+ L E+ L++  +ACD             ++VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI +K +KWQE
Sbjct:  155 LQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 333          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 6.561e-45
Identity = 91/179 (50.84%), Postives = 124/179 (69.27%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L+ +L +A IMVVSVTASTT G+ L ++ L++  +ACD             ++VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+GFS+ +     GY+  ++I QS PP LR +A RL+AAK TLAARVDS      G  G   ++EI +K +KWQE
Sbjct:  155 LQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQE 333          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.909e-44
Identity = 92/179 (51.40%), Postives = 123/179 (68.72%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L+ +L +A IMVVSVTASTT G+ L ++ L++  +ACD             ++VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L+GFS+ +     GY+  ++I QS PP L  +A RL++AK TLAARVDS      G  G   +EEI +K +KWQE
Sbjct:  154 LQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEEIERKFDKWQE 332          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.493e-44
Identity = 92/179 (51.40%), Postives = 123/179 (68.72%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L+ +L +A IMVVSVTASTT G+ L ++ L++  +ACD             ++VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L GFS+ +     GY+  +EI QS P  L  +A RL++AK TLA+RVDS   +P G  G   +EEI +K +KWQE
Sbjct:  154 LQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFSSTSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEEIERKFDKWQE 332          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 90/179 (50.28%), Postives = 122/179 (68.16%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L+ +L +A IMVVSVTASTT G  L +D LQ+  +ACD             ++VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACN+ LLGA+++ L+GFS+ +     GY+   ++ Q+ PP LR +A RL++AK TLA+RVDS      G  G   +EEI +K +KWQE
Sbjct:  166 LQQILTNATIMVVSVTASTTQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHTGYIYHCDVVQTLPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIERKFDKWQE 344          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 82/206 (39.81%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   15 LPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXMKE 632
            LPSA +MV++ TA+TT GKPLP++ ++   + C+             ++V+SR+S +APNLSA+VGS  AA L+G AGGL+ L K PACN+  LG ++    G +        G+L  +EI Q TPP +R +A R+ AAK  LAAR+DS    P G+ G S R+E+ +KIEK  E             D  P           MKE
Sbjct:  183 LPSATVMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGISARKEVERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKE 388          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_USTMA (Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 51/177 (28.81%), Postives = 85/177 (48.02%), Query Frame = 3
Query:   12 LLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS-----TRGDPSG-TAGRSFREEIHKKI 524
            +LP  I   +   A  + G  + E  L+     CD+             ++++RM+ IAPNL+A+VG  V A+L+  AG L  LAK PA  VQ+LGA+K       T     + G +  + +    P  L+ +  R++A K+ L+ R+D+     T+ D    T G   R ++  ++
Sbjct:  236 ILPEEIEETLKAAAEISMGTEISETDLEHIWSLCDQVISITQYRTQLYQYLQNRMAAIAPNLTALVGDLVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHSSLVGQAPQKLKGKMARMVATKAALSIRLDALADADTKSDEGAPTVGIEARAKLESRL 412          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 43/124 (34.68%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  156 DFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIE 527
            ++++ RM + AP+LSA++G  V A+L+  AG L+ LAK PA  VQ+LGA+K       T ++  + G L  +          + R  R LA K ++AARVD     P  T G   R+++  ++E
Sbjct:  289 EYIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLE 412          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_MACFA (Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 49/179 (27.37%), Postives = 83/179 (46.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L  LLP  +   V   A  + G  + E+ +   +  C +            +++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K       +     + G +    +   T P  + +  R+LAAK+ LA R D+   D S   G   R ++  ++   ++
Sbjct:  222 LSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLED 400          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_HUMAN (Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 49/179 (27.37%), Postives = 83/179 (46.37%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQE 539
            L  LLP  +   V   A  + G  + E+ +   +  C +            +++++RM  IAPN++ +VG  V A+L+  AG L  LAK  A  VQ+LGA+K       +     + G +    +   T P  + +  R+LAAK+ LA R D+   D S   G   R ++  ++   ++
Sbjct:  222 LSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARLRTLED 400          
The following BLAST results are available for this feature:
BLAST of FC932130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
PRP31_HUMAN2.945e-4551.40U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
PRP31_MOUSE6.561e-4550.84U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus... [more]
PRP31_XENTR1.909e-4451.40U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENLA2.493e-4451.40U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_DANRE9.473e-4450.28U4/U6 small nuclear ribonucleoprotein Prp31 OS=Dan... [more]
PRP31_SCHPO1.465e-3639.81Pre-mRNA-processing factor 31 OS=Schizosaccharomyc... [more]
NOP58_USTMA2.432e-1528.81Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 P... [more]
YZVL_CAEEL1.207e-1434.68Uncharacterized NOP5 family protein K07C5.4 OS=Cae... [more]
NOP58_MACFA1.207e-1427.37Nucleolar protein 58 OS=Macaca fascicularis GN=NOP... [more]
NOP58_HUMAN1.207e-1427.37Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC34205A01EF PostHarveN Citrus clementina cDNA clone C34205A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932130 ID=FC932130; Name=FC932130; organism=Citrus clementina; type=EST; length=688bp
ATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTGGTGTCCGTCACG
GCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGCCCTTCAAAAGAC
AATTGATGCATGTGATCGAGCTCTTGCACTTGGTGCAGCAAAGAAGAAGG
TCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCGCCCAATCTATCT
GCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGGAACGGCTGGTGG
TCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTCAGCTTCTTGGCG
CAAAGAAAAAGAATCTTGCTGGTTTTTCTACTGCAACATCTCAATTCCGT
GTAGGTTATCTTGAGCAGACAGAGATATTTCAAAGTACACCTCCACCTCT
AAGGATGCGTGCCTGCCGACTCTTGGCTGCAAAATCAACACTTGCAGCAC
GTGTTGATTCTACTAGAGGAGATCCTTCTGGAACTGCTGGGAGGTCTTTC
AGAGAAGAGATTCACAAGAAGATTGAAAAGTGGCAAGAGCCTCCTCCTGC
AAAGCAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGA
GGGGTGGTCGACGGTTAAGGAAGATGAAAGAAGATATGCTGTAACAGATA
TGAGAAAACTGGCTAATAGAATGCTATTTGGTGTACCT
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