FC932133

Overview
NameFC932133
Unique NameFC932133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14444 contig Ccv1_Contig14444:2..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NIFU4_ARATH (NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.659e-72
Identity = 135/184 (73.37%), Postives = 154/184 (83.70%), Query Frame = 1
Query:  133 SRTLSYLSNPITSQNSTLLKSIP-LSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            SR   ++S      + T   ++P L+SS+ + KWN    QRRTMFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGSDF+TVTKS+D SWD+LKPEIFA +MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKELLETRIRPAV DDGGDIEY GF
Sbjct:   37 SRRSLFISATNLLNSRTKDSALPSLNSSLLAQKWNFLGGQRRTMFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGF 220          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NIFU5_ARATH (NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.489e-65
Identity = 116/145 (80.00%), Postives = 135/145 (93.10%), Query Frame = 1
Query:  247 QRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            QRRTMFIQTQ TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+GSDF+TVTKS+D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAMIKELLETRIRP+V DDGGDIEY GF
Sbjct:   71 QRRTMFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKELLETRIRPSVQDDGGDIEYCGF 215          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_MOUSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus musculus GN=Nfu1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.950e-43
Identity = 87/144 (60.42%), Postives = 108/144 (75.00%), Query Frame = 1
Query:  253 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            R MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DFITVTK +E+  W+LLKP+I+ATIMDF++SG PL +  ET      A +E+D E VAMIKELL+TRIRP V +DGGD+ YRGF
Sbjct:   55 RFMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPPPPGEAGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGF 197          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_HUMAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.771e-42
Identity = 97/181 (53.59%), Postives = 123/181 (67.96%), Query Frame = 1
Query:  151 LSNPITSQNSTLLKSIPLSSSVQSGKWNL---FRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            L NP T      +K  PL   VQ   + L   F    R MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG DFITVTK +E+  W+LLKP+I+ATIMDF++SG PL +  ET + +  A +E+D E VAMIKELL+TRIRP V +DGGD+ Y+GF
Sbjct:   26 LKNPYT------IKKQPLHQFVQRPLFPLPAAFYHPVRYMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPSGE--AGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGF 197          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROME (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.730e-42
Identity = 85/145 (58.62%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFFG+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 206          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROSE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.958e-41
Identity = 85/145 (58.62%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+DFIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 206          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROYA (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.557e-41
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 206          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROER (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.557e-41
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFFG+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFFGADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 206          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROSI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila simulans GN=GD15490 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 84/145 (57.93%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  250 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEYRGF 681
            RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+   A +SPLAK L+ V+G+  VFFG+DFIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV MIKELL+TRIRP V +DGGDI + G+
Sbjct:   64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPHGTTAHSSPLAKLLFRVEGVKGVFFGADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY 206          
BLAST of FC932133 vs. ExPASy Swiss-Prot
Match: NFU1_DROGR (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.718e-41
Identity = 93/180 (51.67%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  136 RTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFATIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVXDDGGDIEY 672
            +T S L+  +T Q   L K  PL +          ++ +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+A AA  SPLAK L+ V+G+  VFFGSDFIT++K E+  W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP V +DGGDI +
Sbjct:   47 KTYSTLAVDLTKQQMLLRK--PLETLA-------LQITKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENGEWGLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVF 215          
The following BLAST results are available for this feature:
BLAST of FC932133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NIFU4_ARATH3.659e-7273.37NifU-like protein 4, mitochondrial OS=Arabidopsis ... [more]
NIFU5_ARATH1.489e-6580.00NifU-like protein 5, mitochondrial OS=Arabidopsis ... [more]
NFU1_MOUSE7.950e-4360.42NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_HUMAN1.771e-4253.59NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROME6.730e-4258.62NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSE1.958e-4158.62NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROYA2.557e-4157.93NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROER2.557e-4157.93NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROSI7.441e-4157.93NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROGR9.718e-4151.67NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]

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Properties
Property NameValue
Genbank descriptionC34205A04EF PostHarveN Citrus clementina cDNA clone C34205A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932133 ID=FC932133; Name=FC932133; organism=Citrus clementina; type=EST; length=683bp
GATCACAAGAGAAGAGAGCTTTCTTCAAGCTGAAGCATGAGGGGACTGGG
ACGGCTATTGCAGCGAGGTCTTTCTTCACACCGGCAGAGGCCGGGTTTCC
CCAAACAAAACGACGCCGTAGTTTATGCGTATTCCAGAACGCTGTCGTAT
TTGTCAAACCCGATCACTTCTCAAAATTCCACGTTACTAAAATCTATTCC
TCTCTCTTCTTCTGTACAATCCGGAAAATGGAATCTTTTTCGAGTGCAGA
GGAGGACAATGTTTATACAAACGCAGCCAACACCAAATCCTTCGTCTCTT
ATGTTTTATCCAGGGAAGCCTGTTATGGAAGTTGGGAGTGCAGATTTCCC
GAATGCTCGCGCAGCAATGAACTCTCCATTGGCAAAATCCCTTTACGGGG
TTGATGGTATTACTCGGGTTTTCTTTGGTTCAGATTTCATCACTGTGACA
AAATCAGAGGATACTTCTTGGGATTTACTCAAACCTGAAATTTTTGCTAC
AATTATGGACTTTTATTCGTCAGGGCAACCACTTTTTCTAGACTCAGAAA
CTGCAGCAGCCAAAGACACAGCTATTAATGAGGATGACTCAGAAACTGTT
GCAATGATCAAAGAACTCCTCGAGACCCGTATTCGGCCAGCTGTGNCAGA
TGACGGTGGGGATATTGAGTACAGAGGATTTGA
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