FC932138

Overview
NameFC932138
Unique NameFC932138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14130 contig Ccv1_Contig14130:272..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62
Identity = 128/175 (73.14%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLTL                      EYQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:   65 QGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.581e-62
Identity = 128/175 (73.14%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:   65 QGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.025e-61
Identity = 126/175 (72.00%), Postives = 131/175 (74.86%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLAKKRSRL
Sbjct:   65 QGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLAKKRSRL 239
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.895e-48
Identity = 112/175 (64.00%), Postives = 119/175 (68.00%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKRSRL 525
            QGVLTPGRVRLLL+RGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   K SKAPKIQRLVTPLTL                      EYQKLLA+RLKEQRE+RSESLAKKRSRL
Sbjct:   20 QGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNT-TAEFTTKW--KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESLAKKRSRL 189
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.490e-36
Identity = 90/172 (52.33%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP  L                      EY KLLA RLKE +E+R E +AK+R
Sbjct:   65 QGVLTNGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKIAKRR 232
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36
Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36
Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36
Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.542e-36
Identity = 90/172 (52.33%), Postives = 104/172 (60.47%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
[Close]
BLAST of FC932138 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36
Identity = 93/173 (53.76%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:    1 QGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKV-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLAKKR 516
            QGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV    R    K GKK  +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +AK+R
Sbjct:   65 QGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV---VRKPLNKDGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRR 232
The following BLAST results are available for this feature:
BLAST of FC932138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASPOF1.581e-6273.1440S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH1.581e-6273.1440S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH1.025e-6172.0040S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_TOBAC2.895e-4864.0040S ribosomal protein S6 (Fragment) OS=Nicotiana t... [more]
RS6_ICTPU1.490e-3652.3340S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]
RS6_RAT2.542e-3652.3340S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE2.542e-3652.3340S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA2.542e-3652.3340S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN2.542e-3652.3340S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN3.320e-3653.7640S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34205A09EF PostHarveN Citrus clementina cDNA clone C34205A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932138 ID=FC932138; Name=FC932138; organism=Citrus clementina; type=EST; length=691bp
CAAGGAGTGTTGACCCCTGGACGTGTTCGTCTTCTGCTCCACAGAGGTAC
TCCTTGCTTCCGTGGATATGGAAGGAGAGATGGAGAGCGTCGGAGGAAAT
CTGTTCGTGGATGCATTGTTAGTCCAGATCTCTCAGTGTTGAACTTGGTC
ATCGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACTGACACTGAGAA
GCCCAGGATGAGAGGTCCGAAGAGAGCCTCAAAGATCAGGAAGTTGTTTA
ACCTTTCCAAAGAAGATGATGTTCGGAAGTATGTCAACACATACCGTCGG
ACCTTTACAACCAAAACTGGTAAAAAGGTTAGCAAGGCTCCTAAAATTCA
GAGGTTGGTGACTCCTTTGACTTTGCAGAGGAAGCGCGCCAGAATTGCTG
AGAAGAAGCAGAGAATTGCCAAGGCCAAAGCAGAGGCTGCCGAATACCAG
AAGCTCCTTGCTACCCGGTTGAAGGAACAGCGTGAACGTCGCAGTGAGAG
TTTGGCAAAGAAGAGATCCAGGCTCTCTGCTGCTTCTAAGCCATCTACTG
CTGCGGCTTAGATATGAAACAAGGGTGGTTTTTTGGTCAACAACTAAGTA
TAGTCAGGGCTGAATACTTCTATTAGGTTGAGGTAATTTTGATTGAGTGC
TCTATGGACTGGGGGAGACGCCCCCATTTTGGTTTTGATGG
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