FC932139
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_BOVIN (Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14 Identity = 57/194 (29.38%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 124 KYLQWPDDDA-LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHL--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQ-KRRRLNYRICLWFSGHVV--CCII 687 +++ +P D+A ++ +KDEF ++GIP V+G + HV I AP +Y N+K +S+ V + GA V WPGS+ D VL++S+L + G+ K W++G S + L W++ P H+ T ++ +N V + F L R+ CL + L Y S H++ CC++ Sbjct: 117 QFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYV-------NRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPL---HIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQY--SPEKSSHIILACCVL 298
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_MOUSE (Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.286e-14 Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 1 Query: 124 KYLQWP-DDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCL 618 +++ +P D+ A++ +KDEF ++G+P V+G HV I AP +Y N+K +S+ V + GA V WPGS+ D VL++S+L + G+ K W++G S + L W+L P T ++ +N V + L R+ CL Sbjct: 117 QFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYV-------NRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPLPIPE-TAAEYRYNRAHSATHSVIERTLQTLCCRFRCL 274 HSP 2 Score: 23.483 bits (49), Expect = 3.286e-14 Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 657 VLGACCVLHNI 689 ++ ACCVLHNI Sbjct: 291 IILACCVLHNI 301
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_RAT (Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14 Identity = 56/194 (28.87%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 124 KYLQWPDDDA-LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHL--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQ-KRRRLNYRICLWFSGHVV--CCII 687 +++ +P D+A ++ +KDEF ++G+P V+G++ HV I AP +Y N+K +S+ V + GA V WPGS+ D VL++S+L + G+ K W++G S + L W+L P H+ T ++ +N V + L R+ CL + L Y S H++ CC++ Sbjct: 117 QFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYV-------NRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFFLHTWLLTPL---HIPETPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQY--SPEKSSHIILACCVL 298
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_HUMAN (Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14 Identity = 55/194 (28.35%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 124 KYLQWPDDDA-LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHL--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQ-KRRRLNYRICLWFSGHVV--CCII 687 +++++P D+A ++ +KDEF ++G+P V+G + HV I AP +Y N+K +S+ V + G V WPGS+ D VL++S+L + G+ K W++G S + L W++ P H+ T ++ +N V + F L R+ CL + L Y S H++ CC++ Sbjct: 117 QFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYV-------NRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPL---HIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQY--SPEKSSHIILACCVL 298
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_DANRE (Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.034e-11 Identity = 47/170 (27.65%), Postives = 79/170 (46.47%), Query Frame = 1 Query: 121 PKYLQWPDDDALRK-IKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKS---ALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCL 618 P+++ + D+A ++ KDEF I+GIPNV G + H+ I AP ++Y N+K +SI Q V + G WPGS+ D V ++S L++ W++G + YPL W++ P Q + + +N + F ++ R+ CL Sbjct: 116 PEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIKAPNADDSSYV-------NKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKLFEEQEND--DEGWLLGDNRYPLKKWLMTP-VQSPESPADYRYNLAHTTTHEIVDRTFRAIQTRFRCL 275 HSP 2 Score: 24.2534 bits (51), Expect = 1.034e-11 Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 657 VLGACCVLHNI 689 ++ ACCVLHNI Sbjct: 292 IIQACCVLHNI 302 The following BLAST results are available for this feature:
BLAST of FC932139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932139 ID=FC932139; Name=FC932139; organism=Citrus clementina; type=EST; length=704bpback to top |