FC932160

Overview
NameFC932160
Unique NameFC932160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig935 contig Ccv1_Contig935:487..1140. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932160 vs. ExPASy Swiss-Prot
Match: B3GT9_ARATH (Probable beta-1,3-galactosyltransferase 9 OS=Arabidopsis thaliana GN=B3GALT9 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 2 
Query:  281 METLPMTTAKSSERRGRSKQIH--TSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLSNFLKKSMEQRPKVLTVEDKLMLLGCKDLERRIVEAEMDLTLAKSQGYLKN 598
            ME+LP T    SERR RS +    +SKPSV++AFFSC+AWLYVAGRLWQDAENR +L+N LKKS +Q+PKVLTV+DKLM+LGCKDLERRIVE EM+LTLAKSQGYLKN
Sbjct:    1 MESLPTTVPSKSERRARSSKFSQSSSKPSVIMAFFSCVAWLYVAGRLWQDAENRVVLNNILKKSYDQKPKVLTVDDKLMVLGCKDLERRIVETEMELTLAKSQGYLKN 108
[Close]
BLAST of FC932160 vs. ExPASy Swiss-Prot
Match: B3GTA_ARATH (Probable beta-1,3-galactosyltransferase 10 OS=Arabidopsis thaliana GN=B3GALT10 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.291e-36
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 2 
Query:  281 METLPMTTAKSSERRGR-SKQIHTSKPSVVLAFFSCLAWLYVAGRLWQDAENRTLLSNFLKKSMEQRPKVLTVEDKLMLLGCKDLERRIVEAEMDLTLAKSQGYLK 595
            ME+LP T +  S+RRGR SK  +TSKPS++LAFFSCLAWLYVAGRLWQDA+ R  L+  LK + +QRPKVLTVEDKL++LGCKDLERRIVE EM+L  AKSQGYLK
Sbjct:    1 MESLPTTVSGKSDRRGRFSKSQNTSKPSLILAFFSCLAWLYVAGRLWQDAQYRAALNTVLKMNYDQRPKVLTVEDKLVVLGCKDLERRIVETEMELAQAKSQGYLK 106
The following BLAST results are available for this feature:
BLAST of FC932160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
B3GT9_ARATH5.826e-4074.07Probable beta-1,3-galactosyltransferase 9 OS=Arabi... [more]
B3GTA_ARATH2.291e-3671.70Probable beta-1,3-galactosyltransferase 10 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC34205C07EF PostHarveN Citrus clementina cDNA clone C34205C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932160 ID=FC932160; Name=FC932160; organism=Citrus clementina; type=EST; length=654bp
AAACTTGGAGATTTGATAAGAGCCAGTTCTCTCTCCGACATTGGGATCAC
CTGGATGGCCCTTGTTGAAACCGTCGACGTGCCGTCTGTTTCACAAACTG
TGTTCATTCAATTCATTCACTCAGCAGTAAAAACAAATAAAAGACACTGC
AAATCCCTCTTCACATACCATACAATTTAATCAATAATTACATTCAGATA
TATAAACATAAGTACATAAACACATTCATTTCTATAATTTCTCGATCTCT
TTAGGCTATTATTAGATTGAGAAATTGGAAATGGAGACCTTACCGATGAC
GACGGCGAAATCATCGGAGAGGAGAGGGAGATCGAAGCAAATTCACACAT
CGAAACCCTCAGTTGTCTTGGCTTTCTTCTCTTGCCTCGCTTGGCTTTAC
GTTGCCGGAAGGCTGTGGCAAGATGCTGAGAACAGAACATTACTTTCTAA
TTTTCTTAAGAAAAGCATGGAGCAGAGACCCAAGGTTCTTACAGTTGAAG
ATAAGCTGATGCTTCTAGGATGCAAAGATCTGGAGAGAAGGATTGTGGAA
GCTGAGATGGACTTGACATTAGCCAAGAGTCAAGGGTACCTGAAGAATCA
GTTGCTGCAAAGTGGGTCTTCTTCGGGGAAAAAGCTTCTTGCTGTTATTG
GAGT
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