FC932207

Overview
NameFC932207
Unique NameFC932207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.763e-61
Identity = 112/140 (80.00%), Postives = 127/140 (90.71%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            MSKRGRGG+AGNK +M+LGLPV A +NC DN+GA+NLYIISVKGI  RLNRLP+A VGDMVMATVKKGKP+LRKKVMPAVVVRQ KPWRR DG+F+YFEDNAGVIVNAKGEMKGSAITGP+GKE A+LWPRIAS +  ++
Sbjct:    1 MSKRGRGGSAGNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG++G K +++LGLPVGAV+NC DN+GA+NLYIISVKGI  RLNRLPAAGVGDMVMATVKKGKPELRKKV PAVV+RQ K +RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG++G K +++LGLPVGAV+NC DN+GA+NLYIISVKGI  RLNRLPAAGVGDMVMATVKKGKPELRKKV PAVV+RQ K +RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG++G K +++LGLPVGAV+NC DN+GA+NLYIISVKGI  RLNRLPAAGVGDMVMATVKKGKPELRKKV PAVV+RQ K +RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG++G K +++LGLPVGAV+NC DN+GA+NLYIISVKGI  RLNRLPAAGVGDMVMATVKKGKPELRKKV PAVV+RQ K +RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG++G K +++LGLPVGAV+NC DN+GA+NLYIISVKGI  RLNRLPAAGVGDMVMATVKKGKPELRKKV PAVV+RQ K +RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG++G K +++LGLPVGAV+NC DN+GA+NLYIISVKGI  RLNRLPAAGVGDMVMATVKKGKPELRKKV PAVV+RQ K +RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 5.672e-60
Identity = 108/140 (77.14%), Postives = 125/140 (89.29%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            MSKRGRGG +GNK +M+LGLPV A +NC DN+GA+NLYIISVKGI  RLNRLP+A VGDMVMATVKKGKP+LRKKV+PAV+VRQ KPWRR DG+F+YFEDNAGVIVN KGEMKGSAITGP+GKE A+LWPRIAS +  ++
Sbjct:    1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.408e-60
Identity = 110/139 (79.14%), Postives = 126/139 (90.65%), Query Frame = 3
Query:   42 MSKRGRGGAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVV 458
            MSKRGRGG+AG K +++LGLPVGAV+NC DN+GA+NLY+I+V GI  RLNRLPAAGVGDM +ATVKKGKPELRKKVMPAVV+RQ KP+RR DG+FLYFEDNAGVIVN KGEMKGSAITGPV KE A+LWPRIASN+G +
Sbjct:    1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of FC932207 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.264e-59
Identity = 109/133 (81.95%), Postives = 122/133 (91.73%), Query Frame = 3
Query:   63 GAAGNKLKMTLGLPVGAVMNCCDNSGARNLYIISVKGIGARLNRLPAAGVGDMVMATVKKGKPELRKKVMPAVVVRQSKPWRRPDGIFLYFEDNAGVIVNAKGEMKGSAITGPVGKEAAELWPRIASNSGVVM 461
            GA G K +++LGLPVGA+MNC DNSGARNLYII+VKG G+RLNRLPAA +GDMVMATVKKGKPELRKKVMPA+VVRQ+K WRR DG+FLYFEDNAGVI N KGEMKGSAITGPVGKE A+LWPR+ASNSGVV+
Sbjct:    5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
The following BLAST results are available for this feature:
BLAST of FC932207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
RL23_TOBAC1.763e-6180.0060S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_RAT5.672e-6080.5860S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG5.672e-6080.5860S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE5.672e-6080.5860S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU5.672e-6080.5860S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN5.672e-6080.5860S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN5.672e-6080.5860S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]
RL23_ARATH5.672e-6077.1460S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_AEDAE7.408e-6079.1460S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_YEAST1.264e-5981.9560S ribosomal protein L23 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC34205G07EF PostHarveN Citrus clementina cDNA clone C34205G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932207 ID=FC932207; Name=FC932207; organism=Citrus clementina; type=EST; length=697bp
GAACCTTTTTCACCCAACTTCCCCCGTGATCATCAGCCATCATGTCTAAG
AGAGGTCGTGGCGGTGCCGCCGGCAACAAGCTCAAGATGACTCTCGGTCT
GCCTGTTGGCGCCGTGATGAACTGCTGCGACAACTCCGGTGCTCGCAACT
TGTACATCATCTCCGTCAAGGGCATCGGTGCCCGCCTGAACCGTCTCCCC
GCTGCTGGTGTCGGAGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCC
CGAGCTCCGCAAGAAGGTTATGCCCGCTGTCGTTGTCCGCCAGAGCAAGC
CCTGGCGCCGCCCCGACGGTATCTTCCTGTACTTCGAGGACAACGCAGGA
GTTATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACCGGTCC
CGTCGGAAAGGAAGCTGCTGAGCTCTGGCCCCGTATTGCCTCCAACTCCG
GTGTCGTCATGTAAAGAGAGAAACCCCGAATTTTTAAAGAAAAAGAACGA
TACCAAACCTCAATCTTCTTGGGACCTGGAATGCGGTGCATATGAGACCA
TAGGATTAAAATGGGAGCTGGACAGGTGGGGTCCATTTGACGAAATCCAA
CTGTTAATTCTAAAGCCGGTTTTATCCTCCATCTTCGTGTTTCTCCCTCC
CTCTACTGGCGGCTCTCGGAAGTATTGTTCTAAAACACATCCTTTTG
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