FC932208

Overview
NameFC932208
Unique NameFC932208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11659 contig Ccv1_Contig11659:1257..1585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 74/108 (68.52%), Postives = 96/108 (88.89%), Query Frame = 2
Query:    2 LATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 325
            LA L  SLT+IDQS KK++WA+ +AI+TV++YVA FSIG GPITWVYSSEI PL+LR+QG+S+GV+VNRVTSGV+S++FL +SKA+T GG+F+L+  IA+VAWVFFYT
Sbjct:  374 LAALGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYT 481          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.668e-34
Identity = 67/109 (61.47%), Postives = 91/109 (83.49%), Query Frame = 2
Query:    2 LATLAISLTVIDQSHKKMI-WAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 325
            L  L  SLTVID++  + + WAIGLA++TV+++VA FS+G GP+TWVY+SEI P++LRAQGAS+GVM+NR+ SG++ MTFLSLSK +TIGG+F L+A +A  AWVFF+T
Sbjct:  364 LTALGTSLTVIDRNPGQTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFT 472          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.846e-34
Identity = 67/109 (61.47%), Postives = 91/109 (83.49%), Query Frame = 2
Query:    2 LATLAISLTVIDQSHKKMI-WAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 325
            L  L  SLTVI+++  + + WAIGLA++TV+++VA FSIG GP+TWVY SEI P++LRAQGAS+GVM+NR+ SG++ MTFLSLSK +TIGG+F L+A +A+ AWVFF+T
Sbjct:  364 LTALGTSLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFT 472          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.322e-31
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 2
Query:    2 LATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 322
            L  L   LT+   +  K+ WA+ L+I    S+VAFFSIG+GPITWVYSSE+ PLKLRAQGAS+GV VNRV +  VSM+FLSL+ AIT GG+FF++A +A+VAW FF+
Sbjct:  355 LTMLGFGLTMAQNAGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMNATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFF 461          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.726e-31
Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = 2
Query:    2 LATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 322
            L +LA+SLT++ Q   ++ WA+ L+I +  ++VAFFSIG+GPITWVYSSEI PL+LRAQGASIGV VNR+ +  VSM+FLS++KAIT GG FF++A IA  AW FF+
Sbjct:  360 LTSLAVSLTMV-QRFGRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFF 465          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.495e-22
Identity = 51/107 (47.66%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 LATLAISLTVIDQSHKKMIWAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 322
            L  L+ +LT + Q        I LA+  V   VAFFSIGMGP+ WV +SEI PL+LRAQ +++G + NRV SG+V+M+FLS+S+AIT+GG+FF+++ +++++ +F Y
Sbjct:  380 LFCLSFTLTFLGQG----TLGITLALLFVCGNVAFFSIGMGPVCWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSVIFVY 482          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.795e-12
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   74 AISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 328
            A+  ++ Y+ FF+ GMGP+ W  +SEI PL  R+ G +    +N + + +VS+TFL  ++ +T  G+FFLYA  A+V  +F Y C
Sbjct:  479 ALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGC 563          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.795e-12
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   74 AISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 328
            A+  ++ Y+ FF+ GMGP+ W  +SEI PL  R+ G +    +N + + +VS+TFL  ++ +T  G+FFLYA  A+V  +F Y C
Sbjct:  479 ALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGC 563          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.795e-12
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:   74 AISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTC 328
            A+  ++ Y+ FF+ GMGP+ W  +SEI PL  R+ G +    +N + + +VS+TFL  ++ +T  G+FFLYA  A+V  +F Y C
Sbjct:  490 ALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFIYGC 574          
BLAST of FC932208 vs. ExPASy Swiss-Prot
Match: EDL16_ARATH (Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.421e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   59 WAIGLAISTVLSYVAFFSIGMGPITWVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 316
            W   LA+  VL YVA FSIGMGP+ WV  SEI P+ ++    S+ V+VN   +  VS TF +   + +  G+F+LY++ A+   +F
Sbjct:  374 WVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTF-NFLMSWSSPGTFYLYSAFAAATIIF 458          
The following BLAST results are available for this feature:
BLAST of FC932208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PLT5_ARATH8.548e-3968.52Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT2_ARATH1.668e-3461.47Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT1_ARATH2.846e-3461.47Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT6_ARATH1.322e-3159.81Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT3_ARATH1.726e-3160.75Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT4_ARATH9.495e-2247.66Probable polyol transporter 4 OS=Arabidopsis thali... [more]
MYCT_RAT1.795e-1240.00Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE1.795e-1240.00Proton myo-inositol cotransporter OS=Mus musculus ... [more]
MYCT_HUMAN1.795e-1240.00Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
EDL16_ARATH4.421e-1140.70Sugar transporter ERD6-like 16 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC34205G08EF PostHarveN Citrus clementina cDNA clone C34205G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932208 ID=FC932208; Name=FC932208; organism=Citrus clementina; type=EST; length=328bp
GCTCGCGACCCTTGCTATCTCTCTCACAGTCATAGATCAGTCACACAAAA
AGATGATCTGGGCCATTGGTTTGGCCATCTCAACGGTTTTATCCTACGTG
GCGTTTTTCTCAATCGGGATGGGGCCCATCACGTGGGTTTACAGTTCAGA
GATTCTGCCGTTGAAGCTACGCGCTCAGGGAGCGAGTATTGGGGTCATGG
TGAACAGGGTCACAAGTGGGGTCGTATCGATGACTTTCCTATCGCTTAGT
AAAGCGATCACGATTGGCGGCTCCTTCTTTCTATACGCGTCAATTGCATC
AGTTGCGTGGGTGTTTTTCTACACGTGT
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