FC932227

Overview
NameFC932227
Unique NameFC932227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932227_ssr51 microsatellite FC932227_ssr51:51..68. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932227_ssr123 microsatellite FC932227_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15477 contig Ccv1_Contig15477:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP1_BOVIN (Xaa-Pro aminopeptidase 1 OS=Bos taurus GN=XPNPEP1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.556e-30
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  386 IDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSD 688
            I AYIIPS DAHQSE+IA C  RRA++SGF GSAGTA+VT++ AA+WTDGRYFLQA KQ+ S+W LM+ G    PT  +WL  VL  G R G+DP +  +D
Sbjct:   27 IQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIVTEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTD 127          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP1_HUMAN (Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP1 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.644e-30
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  386 IDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSD 688
            I AYIIPS DAHQSE+IA C  RRA++SGF GSAGTA++T++ AA+WTDGRYFLQA KQ+ S+W LM+ G    PT  +WL  VL  G R G+DP +  +D
Sbjct:   27 IQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTD 127          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP1_RAT (Xaa-Pro aminopeptidase 1 OS=Rattus norvegicus GN=Xpnpep1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 64/120 (53.33%), Postives = 81/120 (67.50%), Query Frame = 2
Query:  338 EKLRALRELFSRP---GVNIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSD 688
            E LR LR+           I AYIIPS DAHQSE+IA C  RRA++SGF GSAGTA++T++ AA+WTDGRYFLQA KQ+ ++W LM+ G    PT  +WL  VL  G R G+DP +  +D
Sbjct:    8 ELLRQLRQAMRNSECVAEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDNNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTD 127          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP1_MOUSE (Xaa-Pro aminopeptidase 1 OS=Mus musculus GN=Xpnpep1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.921e-30
Identity = 64/120 (53.33%), Postives = 81/120 (67.50%), Query Frame = 2
Query:  338 EKLRALRELFSRP---GVNIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSD 688
            E LR LR+           I AYIIPS DAHQSE+IA C  RRA++SGF GSAGTA++T++ AA+WTDGRYFLQA KQ+ ++W LM+ G    PT  +WL  VL  G R G+DP +  +D
Sbjct:    8 ELLRQLRQAMRNSEYVAEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDNNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTD 127          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP2_PIG (Xaa-Pro aminopeptidase 2 OS=Sus scrofa GN=XPNPEP2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 70/144 (48.61%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  263 IRNC-TSITAKPSSEFNRNRTQDAPDEKLRALRELFSRPGVNIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSDA 691
            +RNC TS    P +  N          +L ALRE       N+ AYIIP  DAH SE+I EC  RRA+I+GF GSAG AVVT+ KAALWTD RY+ QAE+Q+  +W L +  + G   T  WL   +  GGR G DPFLFS D+
Sbjct:   32 VRNCSTSPPYLPVTAVNTTA-------QLTALREQMLTQ--NLSAYIIPDTDAHMSEYIGECDQRRAWITGFIGSAGIAVVTERKAALWTDSRYWTQAERQMDCNWELHKEVSTGHIVT--WLLTEIPVGGRVGFDPFLFSIDS 164          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP2_HUMAN (Xaa-Pro aminopeptidase 2 OS=Homo sapiens GN=XPNPEP2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  344 LRALRELFSRPGVNIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSD 688
            L ALR+       N+ AYIIP  DAH +E+I +   RRA+I+GFTGSAGTAVVT  KAA+WTD RY+ QAE+Q+  +W L +    G      WL   +  GGR G DPFL S D
Sbjct:   54 LTALRQQMQTQ--NLSAYIIPGTDAHMNEYIGQHDERRAWITGFTGSAGTAVVTMKKAAVWTDSRYWTQAERQMDCNWELHK--EVGTTPIVTWLLTEIPAGGRVGFDPFLLSID 164          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP1_DICDI (Xaa-Pro aminopeptidase 1 OS=Dictyostelium discoideum GN=xpnpep1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  383 NIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFS 682
            ++ AYI+PS DAHQSE+I     RR YISGF+GSAG  V+T D   LWTDGRY+LQAEK+L S+W +M+    G PT  +WL   L    + GID  L S
Sbjct:   37 SLSAYIVPSEDAHQSEYICVKDKRREYISGFSGSAGCVVITLDNQLLWTDGRYWLQAEKELESNWKIMKDRVVGEPTIQDWLLSNLNKENKVGIDSRLIS 136          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: YAA1_SCHPO (Uncharacterized peptidase C22G7.01c OS=Schizosaccharomyces pombe GN=SPAC22G7.01c PE=2 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 2
Query:  341 KLRALRELFSRPGVNIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRSGIDPFLFSSDA 691
            +L  LREL    G  +  Y++PS DAH SE+  +   RRA+ISGF GSAG AV+ +  AAL+TDGRYF QA +QL  +W LM+ G  GVPT  E+   +     + GID  L +  A
Sbjct:    8 RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAALFTDGRYFNQASQQLDENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPA 122          
BLAST of FC932227 vs. ExPASy Swiss-Prot
Match: XPP_YEAST (Putative Xaa-Pro aminopeptidase OS=Saccharomyces cerevisiae GN=YLL029W PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  314 NRTQDAPDEKLRALRELFSRPGVNIDAYIIPSPDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKD-----------KAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEW 625
            NR  +  D  L+  +E+      ++  YI+PS D HQSE+++    RRA+ISGF+GSAG A +T+D           K+ L TDGRYF QA ++L  +W L+R  N    T  EW
Sbjct:  100 NREVNTTDRLLKLRQEMKKH---DLCCYIVPSCDEHQSEYVSLRDQRRAFISGFSGSAGVACITRDLLNFNDDHPDGKSILSTDGRYFNQARQELDYNWTLLRQ-NEDPITWQEW 210          
The following BLAST results are available for this feature:
BLAST of FC932227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
XPP1_BOVIN3.556e-3060.40Xaa-Pro aminopeptidase 1 OS=Bos taurus GN=XPNPEP1 ... [more]
XPP1_HUMAN4.644e-3059.41Xaa-Pro aminopeptidase 1 OS=Homo sapiens GN=XPNPEP... [more]
XPP1_RAT7.921e-3053.33Xaa-Pro aminopeptidase 1 OS=Rattus norvegicus GN=X... [more]
XPP1_MOUSE7.921e-3053.33Xaa-Pro aminopeptidase 1 OS=Mus musculus GN=Xpnpep... [more]
XPP2_PIG1.184e-2548.61Xaa-Pro aminopeptidase 2 OS=Sus scrofa GN=XPNPEP2 ... [more]
XPP2_HUMAN9.379e-2350.43Xaa-Pro aminopeptidase 2 OS=Homo sapiens GN=XPNPEP... [more]
XPP1_DICDI3.564e-2253.00Xaa-Pro aminopeptidase 1 OS=Dictyostelium discoide... [more]
YAA1_SCHPO3.940e-2146.15Uncharacterized peptidase C22G7.01c OS=Schizosacch... [more]
XPP_YEAST1.773e-1340.00Putative Xaa-Pro aminopeptidase OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC34206A03EF PostHarveN Citrus clementina cDNA clone C34206A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932227 ID=FC932227; Name=FC932227; organism=Citrus clementina; type=EST; length=692bp
GTTCCATTTTTAGTTTCTTACAAACTCAAACCTTATCTTCATCACCTCCG
TCTCTCTCTCTCTCTCTCGCTCTCTCAAGAGAATTGCTAGCATGTACTCA
CTACCATCACAAGCAATGCGCCCTCTCTCTCTCTCACCATGCCTCACCAG
ATCATCTTACCTTCGTTTCCGCATCCTGTCCTCTCTTTCTCTTCCTCCTA
TTTTCCATAATTCCCAAACCCGCCTCTCATTTTCTAAAAATTACACAAGG
CCCCATCTTTTTATCAGAAATTGCACTTCCATCACCGCCAAGCCATCTTC
GGAGTTCAACAGGAACCGGACCCAGGATGCTCCGGACGAGAAGCTCCGTG
CTCTTCGGGAGTTGTTTTCGAGGCCGGGTGTTAATATTGACGCGTATATC
ATACCTTCTCCGGATGCTCATCAGAGTGAATTCATTGCGGAATGTTATAT
GAGGAGGGCGTATATATCTGGATTTACGGGCAGTGCTGGCACTGCTGTTG
TTACAAAAGATAAAGCAGCTCTTTGGACAGATGGTCGTTATTTTCTTCAG
GCTGAGAAGCAGTTGAGCTCTAGCTGGATTCTCATGCGGAGTGGCAATCA
TGGAGTCCCTACAACTTTTGAATGGTTAAATGATGTTTTGGCACCAGGAG
GCAGAAGTGGCATTGATCCCTTTCTTTTCTCTTCTGATGCTG
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