FC932235

Overview
NameFC932235
Unique NameFC932235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2354 contig Ccv1_Contig2354:37..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_ARATH (4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 4.673e-88
Identity = 158/226 (69.91%), Postives = 186/226 (82.30%), Query Frame = 1
Query:    1 DLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            DLRF+FTAPYSP              +P+FDH +CRSF +SHGL  R++A+EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLPGFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV  FTGFH+FAEFTA+DVGT+ESGLNS VLA+NDEMVLLP+NEPV GTKRKS+IQTYLEHNEGAG+QHLAL+SEDIFRT
Sbjct:   94 DLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYLEHNEGAGLQHLALMSEDIFRT 319          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_DAUCA (4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.726e-78
Identity = 154/226 (68.14%), Postives = 175/226 (77.43%), Query Frame = 1
Query:    1 DLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFP-LDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            +L FVFTAPYSP              +P+F  +   SFAA HGLA R+IA+EV D   AF  SVA GA+P+S PV LD+ A +AEV+LYGDVVLR+VS+  +     FLPGFE  +  +SFP LDYGIRRLDHAVGNV EL P V Y+K FTGFHEFAEFTAEDVGT ESGLNSVVLANN+EMVLLP+NEPV+GTKRKS+IQTYLEHNEGAGVQHLALVSEDIFRT
Sbjct:   93 NLSFVFTAPYSPSTTTSSGSAA----IPSFSASGFHSFAAKHGLAVRAIALEVADVAAAFEASVARGARPASAPVELDDQAWLAEVELYGDVVLRFVSFGREEGL--FLPGFEAVEGTASFPDLDYGIRRLDHAVGNVTELGPVVEYIKGFTGFHEFAEFTAEDVGTLESGLNSVVLANNEEMVLLPLNEPVYGTKRKSQIQTYLEHNEGAGVQHLALVSEDIFRT 312          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_SOLSC (4-hydroxyphenylpyruvate dioxygenase OS=Solenostemon scutellarioides PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 5.546e-73
Identity = 145/227 (63.88%), Postives = 173/227 (76.21%), Query Frame = 1
Query:    1 DLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPT-DEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            +L FVFTAPYSP              +PTF  +  R+F +SHGLA R++A++V+ A  A++ +V+ GAKP SPPV+L D    IAEV LYGD VLR+VS    A+   FLPGFE   D +S   LDYGIRRLDHAVGNVP+L P V Y+K FTGFHEFAEFTAEDVGT+ESGLNSVVLANN+E VL P+NEPV+GTKRKS+IQTYL+HNEGAGVQHLAL++EDIFRT
Sbjct:   86 ELSFVFTAPYSPSLAEPSSAS-----IPTFSFSDHRAFTSSHGLAVRAVAIQVDSASSAYSAAVSRGAKPVSPPVVLADCETAIAEVHLYGDTVLRFVSCGSGADGW-FLPGFEVVGDGVSCQELDYGIRRLDHAVGNVPKLEPVVDYLKKFTGFHEFAEFTAEDVGTAESGLNSVVLANNNENVLFPLNEPVYGTKRKSQIQTYLDHNEGAGVQHLALITEDIFRT 306          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_HORVU (4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.369e-63
Identity = 129/224 (57.59%), Postives = 156/224 (69.64%), Query Frame = 1
Query:    4 LRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            L F+FTAPY+               LP+F   A R F+A HG+A RS+A+ V DA  AF  S   GA+P+  PV L      AEV+LYGDVVLR+VS+ D  + + FLPGFE      +  +DYG+ R DH VGNVPELAPA AY+  FTGFHEFAEFTAEDVGT+ESGLNSVVLANN E VLLP+NEPV GTKR+S+IQT+LEH+ G GVQH+A+ S D+ RT
Sbjct:   90 LAFLFTAPYA------NGCDAATASLPSFSADAARRFSADHGIAVRSVALRVADAAEAFRASRRRGARPAFAPVDLGRGFAFAEVELYGDVVLRFVSHPDGTD-VPFLPGFEGVTNPDA--VDYGLTRFDHVVGNVPELAPAAAYIAGFTGFHEFAEFTAEDVGTTESGLNSVVLANNSEGVLLPLNEPVHGTKRRSQIQTFLEHHGGPGVQHIAVASSDVLRT 304          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_NEUCR (4-hydroxyphenylpyruvate dioxygenase OS=Neurospora crassa GN=B23G1.170 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24
Identity = 79/237 (33.33%), Postives = 112/237 (47.26%), Query Frame = 1
Query:    1 DLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL----AVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP------TDEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            D+RFVFT+P                         C      HG A + +A EV++ D  F+ +VA GA     P  L +        A ++ YGD     +S  D      FLPGF        T ++ S PL     R+DH VGN    E+  A A+ +    FH F       + T  S LNS+V+A+ + +V +P+NEP  G K+KS+I+ Y+  N GAGVQH+AL++ DI  T
Sbjct:   79 DVRFVFTSPIRSQKCLPEEEPISDADRKLLQE--CHEHLEKHGDAVKDVAFEVDNVDGVFHKAVAAGADVVQEPTTLTDKMHGSVRTAVIRTYGDTTHTLISRADYNG--PFLPGFRTAAPSSATVQLPSVPL----ARIDHCVGNQDWNEMVSACAFYEQCLSFHRFWSVDDSQICTEFSALNSIVMASENNLVKMPINEPAPG-KKKSQIEEYVVFNSGAGVQHIALLTPDIIST 306          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD1_ASPFU (Probable 4-hydroxyphenylpyruvate dioxygenase 1 OS=Aspergillus fumigatus GN=AFUA_2G04200 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22
Identity = 69/192 (35.94%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL--DNLAV-IAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPT----DEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFR 672
            HG   + +A EV+  D  F  +  +GAK  S P  L  DN  V +A +Q YG+     V  +  + H  FLPG+       D IS       + R+DH VGN    E+     Y +   GFH F     + + T  S L S+V+A+ +E+V +P+NEP  G K++S+I+ Y++   GAGVQH+AL+++DI R
Sbjct:  109 HGDGVKDVAFEVDSVDSVFYAATNNGAKIVSQPRTLEDDNGQVRVATIQTYGETTHTLV--ERGSYHGAFLPGYRMETGVEDPISQLLPGVHLNRIDHCVGNQDWDEMDKVCEYYEKALGFHRFWSVDDKQICTEYSALKSIVMASPNEVVKMPINEPAKG-KKQSQIEEYVDFYNGAGVQHIALLTDDIIR 297          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_MAGGR (4-hydroxyphenylpyruvate dioxygenase OS=Magnaporthe grisea GN=HPD4 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 73/240 (30.42%), Postives = 115/240 (47.92%), Query Frame = 1
Query:    1 DLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAA---SHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL----AVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYG------IRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            D+RFVFT+P                 +   D A  +   A    HG A + +  EV++    +  +V  GA   +PP  L +       +A +Q YGD     +S  +      FLPGF    +++  P  Y       ++R+DH VGN    ++  A  + +    FH F       + T  S LNS+V+A+ + +V +P+NEP  G K++S+I+ Y+  N GAGVQH+AL++ DI  T
Sbjct:   85 DVRFVFTSPIRSHVHLPEDEP-----ISDEDRALLKEMHAHLEKHGDAVKDVCFEVDNVQGVYERAVQQGAVSIAPPKTLSDKEHGSVTMAVIQTYGDTTHTLLSRDNFRG--TFLPGFR---DVNRQPAAYSALAPVPLQRIDHCVGNQDWDDMRAACDFYERCLSFHRFWSVDDNQISTDFSALNSIVMASPNNVVKMPINEPAKG-KKRSQIEEYVTFNSGAGVQHIALLTSDIITT 313          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_BOVIN (4-hydroxyphenylpyruvate dioxygenase OS=Bos taurus GN=HPD PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 75/191 (39.27%), Postives = 100/191 (52.36%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFEPTD----EISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDI 666
            HG   + IA EVED D     +   GAK    P V  D L  +  A +Q YGD     V   +K N+   FLPGFE       ++S  P    +  +DH VGN P  E+  A  +      FH F       V T  S L SVV+AN +E + +P+NEP  G K+KS+IQ Y+++N GAGVQH+AL ++DI
Sbjct:   89 HGDGVKDIAFEVEDCDYIVQKARERGAKIVREPWVEQDKLGKVKFAVLQTYGDTTHTLV---EKMNYTGRFLPGFEAPPFMDPQLSKLP-SCSLEIIDHIVGNQPDQEMVSASEWYLKNLQFHRFWSVDDTQVHTEYSSLRSVVVANYEESIKMPINEPAPG-KKKSQIQEYVDYNGGAGVQHIALKTKDI 274          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_YARLI (4-hydroxyphenylpyruvate dioxygenase OS=Yarrowia lipolytica GN=YALI0B21846g PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 66/196 (33.67%), Postives = 104/196 (53.06%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVVLRYV---SYKDKANHLDFLPGFEPT----DEISSFPLDYGIRRLDHAVGNVP--ELAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            HG A + +A EV++ +  F+ +V  G +  S P +L +       A +  YGD     +   SY+       FLPGF  T    D I++F  +  +  +DH VGN    E+  A  Y +   GFH F     +D+ T  S L SVV+A+ +E + +P+NEP  G K+KS+I+ Y++  +G G+QH+AL ++ I  T
Sbjct:  101 HGDAVKDVAFEVDNVEQLFSAAVKKGVRVISEPKVLKDAHGSVTYAVISTYGDTTHTLIERGSYEGA-----FLPGFVDTSANKDPIAAFLPNIELMHIDHCVGNQDWNEMDNACKYYEETLGFHRFWSVDDKDICTEFSALKSVVMASPNEKIKMPVNEPAVG-KKKSQIEEYIDFYDGPGIQHIALRTDCILDT 290          
BLAST of FC932235 vs. ExPASy Swiss-Prot
Match: HPPD_TETTH (4-hydroxyphenylpyruvate dioxygenase OS=Tetrahymena thermophila GN=TFA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 1
Query:  124 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEP---TDEISSFPLDYGIRRLDHAVGNVPE--LAPAVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSRIQTYLEHNEGAGVQHLALVSEDIFRT 675
            HG   + +A  VED    +N ++  GAK + PP  L +      IA V  YG+V+  ++   D      F+PGF      D +++   D     +DH VGN P+  +  A  + +    FH F       + T  S L S+V+ + D+ + +P+NEP  G KRKS+IQ Y++   G GVQH+AL + D+  T
Sbjct:  103 HGDGVKDVAFAVEDCHSIYNKAIQRGAKCAYPPQDLKDEHGSVTIAAVHTYGEVIHTFIQRNDYKGF--FMPGFVAHPLKDPLNNVLPDISYNYVDHIVGNQPDNMMTSAADWYEKTLDFHRFWSVDDSMIHTEFSSLRSIVMTDYDQKIKMPINEPADG-KRKSQIQEYIDFYAGPGVQHIALNTSDVINT 291          
The following BLAST results are available for this feature:
BLAST of FC932235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
HPPD_ARATH4.673e-8869.914-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis... [more]
HPPD_DAUCA5.726e-7868.144-hydroxyphenylpyruvate dioxygenase OS=Daucus caro... [more]
HPPD_SOLSC5.546e-7363.884-hydroxyphenylpyruvate dioxygenase OS=Solenostemo... [more]
HPPD_HORVU1.369e-6357.594-hydroxyphenylpyruvate dioxygenase OS=Hordeum vul... [more]
HPPD_NEUCR6.217e-2433.334-hydroxyphenylpyruvate dioxygenase OS=Neurospora ... [more]
HPPD1_ASPFU9.926e-2235.94Probable 4-hydroxyphenylpyruvate dioxygenase 1 OS=... [more]
HPPD_MAGGR2.888e-2130.424-hydroxyphenylpyruvate dioxygenase OS=Magnaporthe... [more]
HPPD_BOVIN2.888e-2139.274-hydroxyphenylpyruvate dioxygenase OS=Bos taurus ... [more]
HPPD_YARLI4.926e-2133.674-hydroxyphenylpyruvate dioxygenase OS=Yarrowia li... [more]
HPPD_TETTH4.926e-2132.814-hydroxyphenylpyruvate dioxygenase OS=Tetrahymena... [more]

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Properties
Property NameValue
Genbank descriptionC34206B03EF PostHarveN Citrus clementina cDNA clone C34206B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932235 ID=FC932235; Name=FC932235; organism=Citrus clementina; type=EST; length=675bp
GACCTCCGTTTCGTCTTTACGGCGCCGTATTCCCCTTCAATCTCCGACGC
CGCCGATGCTGGCAACTCCTCAGCATCTCTCCCGACTTTCGACCACGCAG
CTTGCCGCAGTTTCGCCGCGTCTCATGGGCTCGCCGCGCGGTCGATTGCT
GTTGAAGTTGAAGACGCCGACGTTGCTTTCAACACCAGCGTGGCTCACGG
TGCTAAGCCCTCCTCTCCTCCTGTGATTCTCGATAACCTTGCTGTGATTG
CCGAGGTCCAGTTATACGGCGACGTCGTTTTGCGTTATGTTAGTTATAAA
GATAAAGCGAATCATCTTGATTTCCTGCCGGGTTTCGAACCGACGGATGA
GATTTCATCGTTTCCGTTGGATTACGGAATCAGGCGGCTCGATCACGCCG
TCGGCAACGTTCCGGAACTCGCTCCGGCTGTTGCTTATGTGAAATCATTC
ACTGGGTTTCACGAGTTCGCCGAGTTCACAGCCGAAGACGTCGGCACGAG
TGAGAGTGGACTCAACTCAGTGGTGTTAGCAAACAACGATGAAATGGTAT
TGCTCCCGATGAACGAGCCCGTGTTTGGGACGAAGCGTAAGAGTCGGATA
CAGACCTATCTGGAGCACAATGAGGGAGCTGGCGTGCAGCACTTGGCTCT
TGTGAGTGAGGACATTTTTAGGACT
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