FC932263

Overview
NameFC932263
Unique NameFC932263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932263_ssr557 microsatellite FC932263_ssr557:557..568. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15463 contig Ccv1_Contig15463:30..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.211e-78
Identity = 146/201 (72.64%), Postives = 157/201 (78.11%), Query Frame = 3
Query:   60 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ YVI TSTKVDISGVNV+KFDDKYF K+ E+                   LPQEKKDDQK+VD  +
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVAL 203          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.662e-74
Identity = 137/195 (70.26%), Postives = 154/195 (78.97%), Query Frame = 3
Query:   78 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTK+DISGVN +KFDDKYF K  E+                   +PQEKK+DQK+VD  +
Sbjct:    8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAAL 202          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.400e-73
Identity = 139/202 (68.81%), Postives = 153/202 (75.74%), Query Frame = 3
Query:   57 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTKVDISGV +DKFDDKYF K  E+                   +PQ KKDDQK+VD  +
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAAL 202          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 7.722e-72
Identity = 137/202 (67.82%), Postives = 151/202 (74.75%), Query Frame = 3
Query:   57 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ YVIGTSTKVDISGV +DKFDDKYF K  E+                   +PQ KKDDQK+VD  +
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAAL 202          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34
Identity = 96/232 (41.38%), Postives = 124/232 (53.45%), Query Frame = 3
Query:   63 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            PK+GKP  SRNP L+RGIG++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  R                   + +++K DQK+VD+ I
Sbjct:   37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR-KPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQI 257          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34
Identity = 98/242 (40.50%), Postives = 128/242 (52.89%), Query Frame = 3
Query:   33 AQQKRVASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            A++  V +   K+G+P  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  R                   + +++K DQK+VD+ I
Sbjct:   27 AKKANVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR-KPRHQEGEIFDTEKERYQISEQRKVDQKAVDSQI 257          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34
Identity = 95/231 (41.13%), Postives = 124/231 (53.68%), Query Frame = 3
Query:   66 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+  R                   + +++K DQK+VD+ I
Sbjct:   34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLR-KPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQI 253          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34
Identity = 96/231 (41.56%), Postives = 124/231 (53.68%), Query Frame = 3
Query:   66 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+  R                   + +++K DQK+VD+ I
Sbjct:   37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLR-KPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQI 256          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.424e-33
Identity = 97/233 (41.63%), Postives = 122/233 (52.36%), Query Frame = 3
Query:   63 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            PK+ KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+  R                   + +++K DQK+VD  I
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLR-KPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQI 265          
BLAST of FC932263 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 139.428 bits (350), Expect = 1.574e-32
Identity = 98/242 (40.50%), Postives = 127/242 (52.48%), Query Frame = 3
Query:   42 KRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQTYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPI 662
            K+ +S A K  + KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+  R                   + +++K DQK+VD+ I
Sbjct:   37 KKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLR-KPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQI 267          
The following BLAST results are available for this feature:
BLAST of FC932263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR7.211e-7872.6460S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH1.662e-7470.2660S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH2.400e-7368.8160S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH7.722e-7267.8260S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_HUMAN1.288e-3441.3860S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_CHILA1.288e-3440.5060S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_PIG1.682e-3441.1360S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_BOVIN1.682e-3441.5660S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_MOUSE1.424e-3341.6360S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_RAT1.574e-3240.5060S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC34206F01EF PostHarveN Citrus clementina cDNA clone C34206F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932263 ID=FC932263; Name=FC932263; organism=Citrus clementina; type=EST; length=665bp
GACGCTCGCACACGAAACTCTCATTCACGGAGGCACAGCAGAAGCGGGTA
GCATCAATGGCGCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATCCGGA
GCTGATCCGAGGAATTGGAAAGTTCTCTCGTTCAAAGATGTACCATAAGA
GGGGTCTGTGGGCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCGTCAC
GACCCTAAGCCCAAAGCCGCTGCTCCCGCCGAGAAGCCCCCCAAGTTTTA
CCCCGCCGATGACGTCAAGAAACCACTCGTCAACAAGCGCAAGCCTAAAC
CCACCAAGCTTAGAGCAAGCATCACCCCAGGGACAGTGCTGATTATACTA
GCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTCCATC
TGGGTTGCTTCTAGTTTCTGGGCCATTTAAGATCAATGGTGTTCCTTTAC
GACGTGTGAACCAGACTTACGTGATTGGAACTTCTACCAAAGTTGATATC
TCCGGAGTGAATGTGGATAAGTTTGATGATAAGTATTTTGCCAAGGAAGT
CGAGAGGAAGAAGAAGAAAGGAGAGAATGAGTTCTTTGGGTCAGAGAAAG
AGGAGAAGAAGTCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTCCGTT
GATACACCCATTGAT
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