FC932275

Overview
NameFC932275
Unique NameFC932275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 102/189 (53.97%), Postives = 130/189 (68.78%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK 654
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+W+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWR 195          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 102/189 (53.97%), Postives = 130/189 (68.78%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK 654
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+W+
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWR 195          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.215e-55
Identity = 101/189 (53.44%), Postives = 130/189 (68.78%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK 654
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + +++  SGGCDN +K+WK
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.779e-55
Identity = 103/189 (54.50%), Postives = 129/189 (68.25%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK 654
            ++T HED +HD  MDYYG RLAT SSD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+WK
Sbjct:    8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWK 195          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.344e-52
Identity = 97/194 (50.00%), Postives = 126/194 (64.95%), Query Frame = 1
Query:   82 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG---FLDPVQKLCSGGCDNTVKVWK 654
            M  Q +++GHED VHD   DYYGK LAT SSD  IKI  VG    QHL  L GH+G VW+VAWAHPKFG ILAS S+D  VI+WKE  +N W   H +  H+ SVNSI WAPHE GL LAC SSDG++++     +  W+  +  Q   +GV SVSW+P+  P +LV S       P++++ +G CDN +K++K
Sbjct:    1 MATQNVDSGHEDMVHDAQFDYYGKFLATCSSDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFK 193          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.486e-51
Identity = 106/227 (46.70%), Postives = 134/227 (59.03%), Query Frame = 1
Query:   88 PQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-----------------------GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV------------GSGFLDPVQKLCSGGCDNTVKVWK 654
            P+ IET HED VHD  +D+YGKRLAT SSD ++K+  + N T    A+ L GH+G VW+VAWAHP FG ILASCS+DG V+IWK+                        ++  W  IK+H    H +SVNSI WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP+  PG+L+             +G    V++  S GCDNTVK+W+
Sbjct:   18 PKNIETQHEDMVHDAQLDFYGKRLATCSSDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTL--HTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWE 241          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.903e-49
Identity = 95/189 (50.26%), Postives = 129/189 (68.25%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV-GSGFLDPVQKLCSGGCDNTVKVW 651
            +GH+D +HD  MDYYG+RLAT SSD +IKI  +  ++ + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E +S     + W +   F  H +SVN + WAPHELG  LAC SSDG++SV   R D  W T +I  AH +GV SVSWAP+ APG+++  +     +++  +GG DN VK+W
Sbjct:    8 SGHDDMIHDAGMDYYGRRLATCSSDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSVSWAPAAAPGSVISATPSTGQIRRFVTGGSDNLVKIW 194          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.538e-48
Identity = 92/186 (49.46%), Postives = 121/186 (65.05%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 651
            ++T H+D +HD  +DYYGKRLAT SSD +IK+  + NN    L  L GH G VW++ WAHPKFG+ILAS S+DG VI+W+E G     + DH    H++SVN++ WAPHE G  LAC SSDG +SV   + DG  DT RI  AH  G  +V W+P +  G++VG       +KL + GCDN VK+W
Sbjct:    4 VDTQHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRETGGVWSELMDHT--AHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCDT-RIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCDNLVKIW 186          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.968e-48
Identity = 96/193 (49.74%), Postives = 126/193 (65.28%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ--KLCSGGCDNTVKVW 651
            +GH++ +HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S    P Q  +  +GG DN +K+W
Sbjct:    9 SGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSN-PGPGQQRRFVTGGSDNLLKIW 198          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.900e-47
Identity = 94/192 (48.96%), Postives = 125/192 (65.10%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG-FLDPVQKLCSGGCDNTVKVW 651
            +GH+D +HD  +DYYG+RLAT SSD +IKI  +  +T + +  L GH+G VW V WAHPKFG+ILAS S+DG V+IW+E +        S  W K   F  H +SVN I WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+LV S   +   ++  +GG DN +K+W
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLVSSNPGIGQQRRFVTGGSDNLLKIW 199          
The following BLAST results are available for this feature:
BLAST of FC932275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SEC13_RAT9.944e-5653.97Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE9.944e-5653.97Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN2.215e-5553.44Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN3.779e-5554.50Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI1.344e-5250.00Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA1.486e-5146.70Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_COCIM6.903e-4950.26Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_SCHPO1.538e-4849.46Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_ASPNC9.968e-4849.74Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_EMENI2.900e-4748.96Protein transport protein sec13 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionC34206G07EF PostHarveN Citrus clementina cDNA clone C34206G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932275 ID=FC932275; Name=FC932275; organism=Citrus clementina; type=EST; length=657bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTG
GAAAGCT
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