FC932317

Overview
NameFC932317
Unique NameFC932317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.305e-90
Identity = 143/199 (71.86%), Postives = 163/199 (81.91%), Query Frame = 3
Query:  117 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYXVVFCP 713
            F+I NNCP TVWAAAVPGGG++LD+GQ W I    GTK AR+W RT C FD +G+GKC+TGDCNGLL+CQ +G  PNTLAEYAL QFN++DF D+S +DGF+V MEFS  S  C R IKCTA+I G+CPNEL+ PGGCN PC VFKTD+YCCNSGNCG T FSKFFKDRCPD YSYPKDD TSTFTCP GT+Y VVFCP
Sbjct:   27 FNIINNCPFTVWAAAVPGGGKRLDRGQNWIINPGAGTKGARVWPRTGCNFDGAGRGKCQTGDCNGLLQCQAFGQPPNTLAEYALNQFNNLDFFDISLVDGFNVAMEFSPTSGGCTRGIKCTADINGQCPNELRAPGGCNNPCTVFKTDQYCCNSGNCGLTNFSKFFKDRCPDAYSYPKDDQTSTFTCPAGTNYKVVFCP 225          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: P21_SOYBN (Protein P21 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.327e-82
Identity = 132/201 (65.67%), Postives = 158/201 (78.61%), Query Frame = 3
Query:  114 KFDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYXVVFCP 713
            +F+ITN C  TVWAA+VP GGG QL+ GQ+W++    GTK AR+WART C FD SG+G C+TGDC G+L+C+ YGA PNTLAEY L  FN++DF D+S +DGF+VPM+FS  S  C R I CTA+I G+CP+ELK  GGCN PC VFKTD+YCCNSG+CGPT +S+FFK RCPD YSYPKDD  STFTC  GTDY VVFCP
Sbjct:    2 RFEITNRCTYTVWAASVPVGGGVQLNPGQSWSVDVPAGTKGARVWARTGCNFDGSGRGGCQTGDCGGVLDCKAYGAPPNTLAEYGLNGFNNLDFFDISLVDGFNVPMDFSPTSNGCTRGISCTADINGQCPSELKTQGGCNNPCTVFKTDQYCCNSGSCGPTDYSRFFKQRCPDAYSYPKDDPPSTFTCNGGTDYRVVFCP 202          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.303e-78
Identity = 131/201 (65.17%), Postives = 155/201 (77.11%), Query Frame = 3
Query:  117 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYXVVFCP 713
            FDI N C  TVWAAA PGGGR+LD GQ+W+I   PGT  ARIW RT C FD SG+G CETGDCNG+LECQGYG APNTLAE+AL Q N  DF+D+S +DGF++PMEFS  +  C R ++CTA I  +CP +LK  GGCN PC V KT+EYCC +  G+CGPT  S+FFK+RCPD YSYP+DD TS FTCP+GT+Y VVFCP
Sbjct:   28 FDIVNKCTYTVWAAASPGGGRRLDSGQSWSINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKAPNTLAEFALNQPN-QDFVDISLVDGFNIPMEFSPTNGGC-RNLRCTAPINEQCPAQLKTQGGCNNPCTVIKTNEYCCTNGPGSCGPTDLSRFFKERCPDAYSYPQDDPTSLFTCPSGTNYRVVFCP 226          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: TPM1_SOLLC (Osmotin-like protein TPM-1 (Fragment) OS=Solanum lycopersicum GN=TPM-1 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.209e-77
Identity = 127/203 (62.56%), Postives = 153/203 (75.37%), Query Frame = 3
Query:  117 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYXVVFCP 713
            F++ NNCP TVWAA+ P GGGR+LD+GQTW I A  GTK ARIW RT C FD  G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGF++PM F+  +PS  +   I CTANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y VVFCP
Sbjct:   16 FEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARIWGRTNCNFDGDGRGSCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 218          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: OSMO_TOBAC (Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.473e-77
Identity = 127/202 (62.87%), Postives = 154/202 (76.24%), Query Frame = 3
Query:  120 DITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYXVVFCP 713
            ++ NNCP TVWAA+ P GGGR+LD+GQTW I A  GTK AR+W RT C F+A+G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+ +DF D+S +DGF++PM F+  +PS  +   I CTANI GECP EL+VPGGCN PC  F   +YCC  G CGPT FSKFFK RCPD YSYP+DD TSTFTCP G T+Y V+FCP
Sbjct:   25 EVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 226          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 128/202 (63.37%), Postives = 153/202 (75.74%), Query Frame = 3
Query:  120 DITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYXVVFCP 713
            ++ NNCP TVWAA+ P GGGR+L+KGQTW I A  GTK ARIW RT C F+A+G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGF++PM F+   PS  +   I CTANI GECP  LKVPGGCN PC  F   +YCC  G CGPT  SKFFK RCPD YSYP+DD TSTFTCP+G T+Y VVFCP
Sbjct:   25 EVRNNCPYTVWAASTPIGGGRRLNKGQTWVINAPRGTKMARIWGRTGCNFNAAGRGSCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: OS13_SOLCO (Osmotin-like protein OSML13 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 126/202 (62.38%), Postives = 153/202 (75.74%), Query Frame = 3
Query:  120 DITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTG-TDYXVVFCP 713
            ++ NNCP TVWAA+ P GGGR+LD+GQTW I A  GTK ARIW RT C FD +G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGF++PM F+  +PS  +   I CTANI GECP  L+VPGGCN PC  F   +YCC  G CGPT  S+FFK RCPD YSYP+DD TSTFTCP+G T+Y VVFCP
Sbjct:   25 EVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARIWGRTNCNFDGAGRGSCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTNPSGGKCHAIHCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTDLSRFFKQRCPDAYSYPQDDPTSTFTCPSGSTNYRVVFCP 226          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.592e-76
Identity = 125/201 (62.19%), Postives = 158/201 (78.61%), Query Frame = 3
Query:  117 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYXVVFCP 713
            F+I N C  TVWAAA PGGGR+LD GQ+W +    GTK ARIW RT C FD+SG+G+C+TGDC+G L+C G+G  PNTLAEYAL QFN++DF D+S +DGF++PMEFS  S +C+R++ CTA+I G+CPN L+ PGGCN PC VF+T++YCC +  G+C  T +S+FFK RCPD YSYP+DD TSTFTC T T+Y VVFCP
Sbjct:   25 FEILNQCSYTVWAAASPGGGRRLDAGQSWRLDVAAGTKMARIWGRTNCNFDSSGRGRCQTGDCSGGLQCTGWGQPPNTLAEYALNQFNNLDFYDISLVDGFNIPMEFSPTSSNCHRIL-CTADINGQCPNVLRAPGGCNNPCTVFQTNQYCCTNGQGSCSDTEYSRFFKQRCPDAYSYPQDDPTSTFTC-TNTNYRVVFCP 223          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.633e-76
Identity = 128/201 (63.68%), Postives = 151/201 (75.12%), Query Frame = 3
Query:  117 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYXVVFCP 713
            FDI N C  TVWAAA PGGGRQL+ GQ+W+I   PGT  ARIW RT C FD SG+G CETGDCNG+LECQGYG  PNTLAE+AL Q N  DF+D+S +DGF++PMEFS  +  C R ++CTA I  +CP +LK  GGCN PC V KT+E+CC +  G+CGPT  S+FFK RCPD YSYP+DD  S FTCP GT+Y VVFCP
Sbjct:   28 FDIVNQCTYTVWAAASPGGGRQLNSGQSWSINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKPPNTLAEFALNQPN-QDFVDISLVDGFNIPMEFSPTNGGC-RNLRCTAPINEQCPAQLKTQGGCNNPCTVIKTNEFCCTNGPGSCGPTDLSRFFKARCPDAYSYPQDDPPSLFTCPPGTNYRVVFCP 226          
BLAST of FC932317 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.032e-75
Identity = 129/204 (63.24%), Postives = 155/204 (75.98%), Query Frame = 3
Query:  117 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFDVPMEFSSVSPS-CNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCC---NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPTGTDYXVVFCP 713
            F + N CP TVWAA+VP GGGRQL++G++W ITA  GT AARIWART C+FDASG+G C TGDC G+L+C GYG APNTLAEYALKQFN++DF D+S IDGF+VPM F     S C+R  +C  ++   CP EL+  G CN  CPVFK DEYCC    + +C PT +S++FK +CPD YSYPKDDATSTFTCP GT+Y VVFCP
Sbjct:   24 FTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 227          
The following BLAST results are available for this feature:
BLAST of FC932317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TLP_ACTDE3.305e-9071.86Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
P21_SOYBN4.327e-8265.67Protein P21 OS=Glycine max PE=1 SV=1[more]
PRR1_TOBAC1.303e-7865.17Pathogenesis-related protein R major form OS=Nicot... [more]
TPM1_SOLLC3.209e-7762.56Osmotin-like protein TPM-1 (Fragment) OS=Solanum l... [more]
OSMO_TOBAC5.473e-7762.87Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2[more]
OS81_SOLCO1.219e-7663.37Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
OS13_SOLCO1.219e-7662.38Osmotin-like protein OSML13 OS=Solanum commersonii... [more]
OSL3_ARATH1.592e-7662.19Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
PRR2_TOBAC4.633e-7663.68Pathogenesis-related protein R minor form OS=Nicot... [more]
ZEAM_MAIZE1.032e-7563.24Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34207C09EF PostHarveN Citrus clementina cDNA clone C34207C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932317 ID=FC932317; Name=FC932317; organism=Citrus clementina; type=EST; length=725bp
GAAACTTATCTATTTTCATATTCATTATCCTCTCCAAAATGAAGTTCGTT
AAAGCTCTTCCCATTTCTTCTGCTCTTCTTATTATCATTTCCATCACCCT
GACTCATGCTGCCAAATTCGATATCACAAACAATTGCCCCGACACCGTCT
GGGCCGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGACAAGGGTCAAACA
TGGACCATCACCGCCGAGCCAGGCACAAAAGCAGCCCGCATTTGGGCTCG
AACCAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAATGCGAGACCGGTG
ACTGTAACGGACTCCTCGAGTGCCAAGGCTACGGTGCAGCACCTAACACC
TTGGCCGAGTACGCGTTGAAGCAATTTAATGACATGGATTTCATTGACAT
GTCCAACATTGACGGATTCGATGTTCCCATGGAATTTAGCTCTGTCTCTC
CCTCATGCAACCGCGTGATCAAGTGCACTGCTAACATTCTTGGCGAGTGC
CCGAATGAATTGAAGGTTCCTGGAGGATGTAACGGGCCGTGCCCCGTGTT
CAAGACCGACGAGTACTGTTGCAATTCAGGCAACTGCGGACCTACAGGTT
TCTCCAAGTTTTTCAAGGATAGGTGCCCGGATGTTTACAGTTACCCTAAG
GATGACGCTACCAGCACATTTACTTGCCCGACTGGGACAGACTACNAGGT
TGTATTCTGCCCCTGAAGCATTTTT
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