FC932323

Overview
NameFC932323
Unique NameFC932323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932323_ssr139 microsatellite FC932323_ssr139:139..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14381 contig Ccv1_Contig14381:92..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_MOUSE (Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Giyd1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKVQVRSMDELPCYTERDEV 654
            FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  +++   ML +P W  L +T+ +    +      CP  P HM +        P   +R  V
Sbjct:   10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLIIHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEAAFAFHLRVLAHMLRVPPWVRLPLTLRWLRPDF--RHELCPAPPAHMPIAFGPPPPQPLVPKRPAV 165          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_RAT (Structure-specific endonuclease subunit SLX1 OS=Rattus norvegicus GN=Giyd1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 60/141 (42.55%), Postives = 82/141 (58.16%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKV 603
            FF  YLL    PR++G  Y+GFTVNP RR+RQHN G  + GA RT  R PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     +++   ML +P W  L +TV +    +      CP  P HM +
Sbjct:   10 FFGVYLLYCQNPRHRGRVYVGFTVNPARRVRQHNAGRKKGGAWRTSGRGPWDMVLILHGFPSAVAALRFEWAWQHPQASRRLTHVGPRLRSEASFTFHLRVLAHMLRVPPWVRLPLTVRWLRPDF--RHELCPAPPPHMPI 148          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_BOVIN (Structure-specific endonuclease subunit SLX1 OS=Bos taurus GN=GIYD1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.563e-27
Identity = 60/139 (43.17%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHM 597
            FF  YLL  L PR++G  Y+GFTVNP RR++QHNG   + GA RT  R PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L +T+ +    +      CP  P HM
Sbjct:    6 FFGVYLLYCLNPRHRGRVYVGFTVNPARRVQQHNGGRKKGGAWRTSGRGPWEMVLIVHGFPSAVAALRFEWAWQHPQASRRLTHVGRRLRGEATFAFHLRVLAHMLRAPPWVRLPLTLRWLRADF--RQDLCPPPPPHM 142          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_XENLA (Structure-specific endonuclease subunit slx1 OS=Xenopus laevis GN=giyd1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 61/150 (40.67%), Postives = 86/150 (57.33%), Query Frame = 1
Query:  178 KGFFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKV---QVRS 615
            +GF+  YLL    P+YKG  YIGFTVNP RRI+QHNG + + GA +T  R PW+MVL ++GFP +++AL+FEWAWQHP  S  +       K  S     + +   ML +  W  L +T+ +   +Y +        P HM +   QVR+
Sbjct:    6 EGFYGVYLLFCTNPKYKGRIYIGFTVNPERRIQQHNGGKHKGGAWKTSGRGPWDMVLIVHGFPNDIAALRFEWAWQHPHVSRRLTHVPRKTKKQSSFDFHLLVLCHMLRVAPWNRLPLTLRWLRQEYRRELPLLLQPPLHMPLAFGQVRA 155          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_HUMAN (Structure-specific endonuclease subunit SLX1 OS=Homo sapiens GN=GIYD1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNG-EIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKIKLAYTMLNLPNWESLNITVNY 540
            FF  YLL  L PRY+G  Y+GFTVN  RR++QHNG   + GA RT  R PWEMVL ++GFP++V+AL+FEWAWQHP  S  +       +  +  A  +++   ML  P W  L +T+ +
Sbjct:   13 FFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRW 132          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_NEMVE (Structure-specific endonuclease subunit SLX1 homolog OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.881e-25
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  181 GFFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFS-GVANKIKLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKV 603
            GF   YLL  + P++KGHTYIG+TVNP RRI+QHNG + + GA +T +++PW M+L ++GFP ++ ALQFEWAWQ P  S  ++ AA   K     V    ++   +L +  W  L + + +   +Y          P HM V
Sbjct:    9 GFHGVYLLYCVNPKFKGHTYIGYTVNPNRRIKQHNGGVDKGGAYKTSRKKPWNMILIVHGFPNDIIALQFEWAWQKPTVSRRLKSAATKKKPRERPVQYCFRILSELLRVGPWNRLPLHIRWLMREYEMEFDPRCLPPFHMTV 151          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_DROME (Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila melanogaster GN=CG18271 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 64/155 (41.29%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  184 FFACYLLTS--LCPRYKGHTYIGFTVNPRRRIRQHNGEIRC---GAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKI----------KLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKV 603
            F+  YLL S  L PRY+G  Y+GFTVNP+RRIRQHN  + C   GA +T ++ PW MV+ ++GFP N  ALQFEWAWQ P  SL+ R      K +  +  K+          ++   ML +  W  L +TV +  T Y +  S    LP+HM++
Sbjct:   23 FYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHN--LGCDFGGARKTSRKGPWLMVMIVHGFPNNTVALQFEWAWQQP--SLSTR-----LKMYPELKRKLPRETFFDYNFRILSNMLGVGPWNRLPLTVRWLETDYERPFSKA--LPKHMEI 166          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_DROSE (Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila sechellia GN=GM10768 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 64/155 (41.29%), Postives = 87/155 (56.13%), Query Frame = 1
Query:  184 FFACYLLTS--LCPRYKGHTYIGFTVNPRRRIRQHNGEIRC---GAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKI----------KLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKV 603
            F+  YLL S  L PRY+G  Y+GFTVNP+RRIRQHN  + C   GA +T ++ PW MV+ ++GFP N  ALQFEWAWQ P  SL+ R      K +  +  K+          ++   ML +  W  L +TV +  T Y +  S    LP HM++
Sbjct:   23 FYGVYLLCSQSLDPRYRGKCYVGFTVNPKRRIRQHN--LGCDFGGARKTSRKGPWLMVMIVHGFPNNTVALQFEWAWQQP--SLSTR-----LKMYPELKRKLPRETFFDYNFRILSHMLGVGPWNRLPLTVRWLETDYERPFSK--TLPNHMEI 166          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_ANOGA (Structure-specific endonuclease subunit SLX1 homolog OS=Anopheles gambiae GN=AGAP002259 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.364e-23
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  169 DQRKGFFACYLLTSLCP--RYKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVAN---KIKLAYTMLNLPNWESLNITVNYFSTKYSK 561
            ++ + F+  YLL S  P  ++ G TYIG+TV+P RRI+QHN GE   GA RT  R PW MVL ++GFP N+SAL+FEWAWQ P  S  +++     K     +N     ++   ML +  W  L + V +F+ ++ +
Sbjct:    5 EEIEDFYGVYLLVSKSPNPKFAGRTYIGYTVDPNRRIKQHNRGEDAGGARRTSNRGPWTMVLIVHGFPNNISALRFEWAWQQPRVSRRLKQMPELQKKLRKESNFEYNFRILTEMLRMGPWNRLPLVVRWFADEFHR 141          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_DROMO (Structure-specific endonuclease subunit SLX1 homolog OS=Drosophila mojavensis GN=GI23768 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.418e-22
Identity = 62/162 (38.27%), Postives = 90/162 (55.56%), Query Frame = 1
Query:  157 QKAKDQRKGFFACYLLTS--LCPRYKGHTYIGFTVNPRRRIRQHN-GEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSGVANKI----------KLAYTMLNLPNWESLNITVNYFSTKYSKHSSSCPNLPEHMKV 603
            ++A  Q+  F+  YLL S  +  R++G  Y+GFTVNP+RRIRQHN G    GA +T K+ PW+MV+ ++GFP  + ALQFEWAWQ P  +L+ R      K F  +  K+          ++   ML +  W  L +TV +  T Y +       LP HM++
Sbjct:   12 REALAQKGHFYGVYLLCSQSVDVRHRGKCYVGFTVNPKRRIRQHNRGSSFGGAKKTSKKGPWQMVMIVHGFPNKIVALQFEWAWQQP--TLSTR-----LKIFDDLRRKLPRETHFDYNFRIVNRMLGVGPWHRLPLTVRWLETDYEREFQL--PLPRHMRI 164          
The following BLAST results are available for this feature:
BLAST of FC932323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
SLX1_MOUSE1.464e-2740.51Structure-specific endonuclease subunit SLX1 OS=Mu... [more]
SLX1_RAT4.259e-2742.55Structure-specific endonuclease subunit SLX1 OS=Ra... [more]
SLX1_BOVIN5.563e-2743.17Structure-specific endonuclease subunit SLX1 OS=Bo... [more]
SLX1_XENLA1.789e-2540.67Structure-specific endonuclease subunit slx1 OS=Xe... [more]
SLX1_HUMAN3.052e-2545.83Structure-specific endonuclease subunit SLX1 OS=Ho... [more]
SLX1_NEMVE8.881e-2539.86Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_DROME2.187e-2341.29Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_DROSE4.873e-2341.29Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_ANOGA6.364e-2340.15Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_DROMO1.418e-2238.27Structure-specific endonuclease subunit SLX1 homol... [more]

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Properties
Property NameValue
Genbank descriptionC34207D04EF PostHarveN Citrus clementina cDNA clone C34207D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932323 ID=FC932323; Name=FC932323; organism=Citrus clementina; type=EST; length=752bp
GACACTCAAGCGAGACAGAGAGCATCAAAATAGATGCTACTGAGAGAGAT
GCCGAAGAGAAAGGGAAGCAAAGCAGTTCATGACTCAGAAACCCTAATTT
CAAAGTCAAAAACTCTAGATCCAGTAAAAGATGATTTTGAAGAAGAAGAA
GAAGAACAGAAAGCCAAAGATCAACGGAAAGGGTTCTTCGCTTGTTATCT
TTTAACCTCCTTATGCCCCCGTTACAAAGGCCACACCTATATCGGATTCA
CTGTGAACCCGCGTCGTAGAATTAGGCAGCATAATGGTGAAATAAGGTGT
GGGGCAGTGAGGACGAAGAAAAGGCGCCCTTGGGAAATGGTTTTATGCAT
TTATGGTTTCCCAACAAATGTTTCAGCTCTTCAGTTTGAGTGGGCTTGGC
AGCATCCAATGGAATCACTGGCTGTAAGGCGGGCAGCTGCTACATTTAAA
TCCTTCTCTGGAGTTGCCAATAAAATCAAACTCGCATACACGATGCTCAA
CCTCCCTAACTGGGAGAGCTTGAACATCACGGTGAACTATTTTTCAACAA
AATACTCGAAACATTCTTCTAGTTGCCCAAACCTGCCAGAGCACATGAAG
GTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATACTGAAAGAGATGA
GGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAGGAGTACGATGAAGC
TAGTGAAACAGTGGAAGTTAGAGGAACCGCGGAATGTGACAATTATTTTC
AT
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