FC932327

Overview
NameFC932327
Unique NameFC932327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:200..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 5.570e-37
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   74 AEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA 289
            AEEGQV  CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+VA
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVA 74          

HSP 2 Score: 58.9214 bits (141), Expect = 5.570e-37
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 3
Query:  294 EWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 404
            EWAVE+MPTF+  KEGK++ ++VGAKKDELQ  + KH
Sbjct:   76 EWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.020e-36
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 2
Query:   71 MAEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA 289
            MAEEGQV   HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSVA
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVA 73          

HSP 2 Score: 58.5362 bits (140), Expect = 6.020e-36
Identity = 24/37 (64.86%), Postives = 31/37 (83.78%), Query Frame = 3
Query:  294 EWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 404
            +WAVEAMPTF+  KEGK++ ++VGAKKDELQ  + KH
Sbjct:   75 DWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.741e-35
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   74 AEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA 289
            +EEGQV +CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSVA
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVA 74          

HSP 2 Score: 58.151 bits (139), Expect = 1.741e-35
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 3
Query:  294 EWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 404
            +WA++AMPTF+  KEGK+L ++VGAKKDELQ  + KH
Sbjct:   76 DWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.807e-35
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   74 AEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVA 289
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V+
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVS 80          

HSP 2 Score: 57.3806 bits (137), Expect = 3.807e-35
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 3
Query:  294 EWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 407
            EW+VEAMPTFV  K+GK + R+VGAKK+ELQ  + KHA
Sbjct:   82 EWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.988e-31
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   71 MAEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE 292
            MAEE QV +CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK VAE
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAE 74          

HSP 2 Score: 48.9062 bits (115), Expect = 3.988e-31
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 3
Query:  291 KEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 413
            +E+ VEAMP+FV+ KEG+ ++RIVGA+KDEL   +  HA +
Sbjct:   74 EEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHAPI 114          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.285e-30
Identity = 42/74 (56.76%), Postives = 61/74 (82.43%), Query Frame = 2
Query:   71 MAEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE 292
            MA EG+V +CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++VA+
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQ 74          

HSP 2 Score: 48.1358 bits (113), Expect = 7.285e-30
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 3
Query:  291 KEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 404
            +E+ VEAMPTFV  KEG ++ R+VGA KDE+   + KH
Sbjct:   74 QEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.728e-29
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   71 MAEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE 292
            MA EG+V +CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +VAE
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAE 74          

HSP 2 Score: 47.3654 bits (111), Expect = 2.728e-29
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 3
Query:  291 KEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 413
            +E+ V+AMPTF+  KEG++ + +VGA K+E+   +EKH TV
Sbjct:   74 EEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTV 114          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.610e-29
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2
Query:   74 AEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEGMG 301
            AEEGQV  CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SVA+  G
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFG 79          

HSP 2 Score: 49.2914 bits (116), Expect = 4.610e-29
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 3
Query:  291 KEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 413
            KE+ VEAMPTFV  K G+V+ ++VGA K++LQ  + KH  V
Sbjct:   76 KEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGV 116          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 2.912e-28
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   83 GQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAE 292
            G+V S H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK +AE
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAE 87          

HSP 2 Score: 43.8986 bits (102), Expect = 2.912e-28
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  291 KEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 407
            ++++VEAMPTF+  KEG V  R+VGA K+EL   V  HA
Sbjct:   87 EQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHA 125          
BLAST of FC932327 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.959e-28
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   74 AEEGQVSSCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEGMG 301
            AEEGQV  CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KVDVDEL++VA+  G
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFG 79          

HSP 2 Score: 50.0618 bits (118), Expect = 4.959e-28
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 3
Query:  291 KEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 413
            +E+ VEAMPTFVL K+G V+ ++VGA+K++L   + KH  V
Sbjct:   76 QEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGV 116          
The following BLAST results are available for this feature:
BLAST of FC932327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
TRXH_RICCO5.570e-3776.39Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC6.020e-3673.97Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH1.741e-3569.44Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC3.807e-3566.67Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES3.988e-3164.86Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH7.285e-3056.76Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH2.728e-2959.46Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH4.610e-2959.74Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT2.912e-2861.43Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH2_BRANA4.959e-2854.55Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC34207D08EF PostHarveN Citrus clementina cDNA clone C34207D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932327 ID=FC932327; Name=FC932327; organism=Citrus clementina; type=EST; length=561bp
GGACCAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTT
AACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGAGCAGCTGC
CACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAA
GAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGT
TGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATA
TTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGCTGAAGGAATGGG
CTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTG
CAGAGGATTGTGGGAGCGAAGAAGGATGAGCTGCAGCTGGCTGTCGAAAA
GCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTA
CATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTTGTGGCTGCTTA
ATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATATGAATAAATG
ACAATCTTCTA
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