FC932341

Overview
NameFC932341
Unique NameFC932341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9401 contig Ccv1_Contig9401:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932341 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.310e-64
Identity = 131/215 (60.93%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   81 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVATKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFY 713
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YGQVKL Q+V+P K FY
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFY 212          
BLAST of FC932341 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.401e-61
Identity = 122/184 (66.30%), Postives = 138/184 (75.00%), Query Frame = 3
Query:  165 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVATKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFY 713
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVKL Q+V+P K FY
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFY 208          
BLAST of FC932341 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.167e-54
Identity = 119/215 (55.35%), Postives = 143/215 (66.51%), Query Frame = 3
Query:   81 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS----KNNVATKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFY 713
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS    KN  A++A      S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P K FY
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL-----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFY 207          
BLAST of FC932341 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.553e-52
Identity = 107/184 (58.15%), Postives = 131/184 (71.20%), Query Frame = 3
Query:  162 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVATKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFY 713
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P K FY
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFY 208          
The following BLAST results are available for this feature:
BLAST of FC932341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH2.310e-6460.93Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH1.401e-6166.30Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH2.167e-5455.35Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH1.553e-5258.15Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34207E12EF PostHarveN Citrus clementina cDNA clone C34207E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932341 ID=FC932341; Name=FC932341; organism=Citrus clementina; type=EST; length=714bp
GGCCGGGGGCTCCATTTCATTTCTTGAATCATCGCCATCCAGATAACTTT
ACTCATTCAATATTCTGCAAATCAATAATGGCCTCTGCAAGCTCTCTCAA
GCCCATCTCTTATTCTCTGAACCTCCCTAACTCGAGATCCTCTTCTTCCG
AAACCCAAAGGTTGCTAGGTTTCAAATCATCTTTTTCCTCTCATCATCGA
AACCTCAGTCTCTCAACAACCCACCAAGATGTCTCAAGAAGAAGCTCCAA
GAACAACGTCGCCACCAAAGCTTTCTTCTTCAACAAACCCAGCAGCCAAC
CAGATTCTTCCAGGCCTGCTAATAATAAGGTTCAAGAACTGTTCGTGTAT
GAGATCAACGAGCGGGACAGAAACAGCCCGGCAATTCTGAAGCTAAGCCA
AAAGCCTGAACATCTCACAATCGGCGACCTTGTGCCCTTCACGAACAAGC
TCTACACCGGCGACTTACAGAAGCGCATTGGCATCACGGCGGGGCTCTGC
GTGTTGATCAAGCACGAACCGGAGAAGAAGGGTGACCGGTTTGAAGCGAT
TTACAGCTTCTACTTCGGTGACTACGGTCACATATCCGTGCAGGGAGCTT
ATTTGACTTACGAAGACACGTACTTGGCCGTCACCGGTGGCTCCGGGATC
TTTGAGGGCGTGTACGGACAAGTCAAGTTGCATCAAATTGTTTTCCCTTA
CAAGNTGTTTTACA
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