FC932344

Overview
NameFC932344
Unique NameFC932344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5289 contig Ccv1_Contig5289:28..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: YAJO_ECOLI (Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 69/212 (32.55%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   83 LELRPLGNTGLRLS-----CVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAGVPRNEYIVSTKCGRYVDGF--DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLD-RVPPGAVDVILSYCHYS-INDSTLEDLLPYLKSKGVGV 691
            ++  PLG T LR+S     C+ FG    GN    + E  +   ++ A   GINFFDT+  Y    SE+++G+A +     R + +V+TK    V       S  ++ RSID+SL RL +DYVDILQ H  ++ +    + ET+ AL    +AGK R+IG + +    F   L+ +   G    +    HY+ I      ++LP    +GV V
Sbjct:    1 MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGSSEEIVGRALRDF-ARREDVVVATKVFHRVGDLPEGLSRAQILRSIDDSLRRLGMDYVDILQIHRWDYNT---PIEETLEALNDVVKAGKARYIGASSMHASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAV 208          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: ARA2_YEAST (D-arabinose 1-dehydrogenase OS=Saccharomyces cerevisiae GN=ARA2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 54/159 (33.96%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  197 VREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAG--VPRNEYIVSTKCGRY-VDGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPP-----GAVDVILSYCHYSINDSTL 649
            ++ AF  GIN  DTSPYYG   SE + G+A        PR+ Y + TK GR   + F++S + V  S+  S  RL   Y+D++  HD+EF     I+ E +  L+  K  G I+  GI+G P++  T++ +         G++D +LSYC+ ++ ++ L
Sbjct:   41 IKYAFSHGINAIDTSPYYGP--SEVLYGRALSNLRNEFPRDTYFICTKVGRIGAEEFNYSRDFVRFSVHRSCERLHTTYLDLVYLHDVEFVKFPDIL-EALKELRTLKNKGVIKNFGISGYPIDFITWLAEYCSTEESDIGSLDAVLSYCNLNLQNNKL 196          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: YCCK_BACSU (Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 68/207 (32.85%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   86 ELRPLGNTGLRLSCVGFGASPLG--NVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAGVPRNEYIVSTK-CGRYVDG---FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGV 685
            + R LG T L++  +GFGA+ +G  N+F  +++      VR A   G+NF DT+  YG   SE+++G+  +  GV RNE I++TK   + VDG    D S E +   +++SL RL+ DY+D+   H   F      + E    L++ K+ GKI+ IG + L    +  + D    G ++V      YS+     E +LLPY + +G+
Sbjct:    3 QTRTLGKTKLKVKRIGFGANAVGGHNLFPNLNDETGKDLVRTALDGGVNFIDTAFIYGLGRSEELIGEVVQERGV-RNELIIATKGAHKEVDGSIELDNSREFLRSEVEKSLKRLKTDYIDLYYVH---FPDGKTPLAEVAGTLKELKDEGKIKAIGASNLD---YQQLQDFNADGYLEVF--QAEYSLIQRDAEKELLPYCEKQGI 200          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: YQKF_BACSU (Uncharacterized oxidoreductase yqkF OS=Bacillus subtilis GN=yqkF PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 61/206 (29.61%), Postives = 109/206 (52.91%), Query Frame = 2
Query:   92 RPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAGVPRNEYIVSTKCG-RYVDG-----FDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGVGV 691
            R LG + L +S VG G   LG       +N A++ + EA  LGIN+ DT+  Y    +E+++G A +     R++ I++TK G R+ DG     +D S   +  ++ +SL RL+ DY+D+ Q H    G+++  ++ETI A ++ K+ G IR+ GI+ +   +    + +      +++     +S+ D   E+ LP L+   + V
Sbjct:    4 RKLGTSDLDISEVGLGCMSLGT-----EKNKALSILDEAIELGINYLDTADLYDRGRNEEIVGDAIQNR---RHDIILATKAGNRWDDGSEGWYWDPSKAYIKEAVKKSLTRLKTDYIDLYQLHG---GTIEDNIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYVKK-----SNIVSIMMQFSLFDRRPEEWLPLLEEHQISV 193          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: IOLS_BACSU (Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 61/202 (30.20%), Postives = 101/202 (50.00%), Query Frame = 2
Query:   98 LGNTGLRLSCVGFGASPLG--NVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAGVPRNEYIVSTKCGRYVDGFDF----SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLEDLLPYLKSKGV 685
            LG + L++  +G G + +G  N++  ++E      VREA R G+   DT+  YG   SE+++G+  +     R + +++TK      G DF    S + + +S+DESL RL  DY+D+   H   F       +E + AL + K+AGKIR IG++   LE    + +    G VDV+    +  +N    +   PY K   +
Sbjct:    6 LGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGEVLREFN--REDVVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIH---FPDEHTPKDEAVNALNEMKKAGKIRSIGVSNFSLE---QLKEANKDGLVDVLQGE-YNLLNREAEKTFFPYTKEHNI 198          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: YDJG_ECOLI (Uncharacterized oxidoreductase ydjG OS=Escherichia coli (strain K12) GN=ydjG PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 68/217 (31.34%), Postives = 102/217 (47.00%), Query Frame = 2
Query:   95 PLGNTGLRLSCVGFGASPLGNV---FGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAGVPRNEYIVSTKCG----RYVDGF----------DFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGVGV 691
            PLG T + LS +G G   +G      G +     + ++ EA R GIN  DT+P Y    SE ++G+A K   +PR + +V TKCG    R    F          + S E +   +  SL RL +DY+DI   H          + ET+  L + K  GKIR IG   +  +   ++ + +  G +D+I     YSI D  +E +LLP  +  G+ V
Sbjct:    5 PLGTTDITLSRMGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTAPGYNFGNSEVIVGQALKK--LPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGKIRAIGAANVDAD---HIREYLQYGELDII--QAKYSILDRAMENELLPLCRDNGIVV 214          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 50/164 (30.49%), Postives = 85/164 (51.83%), Query Frame = 2
Query:   83 LELRPLGNTGLRLSCVGFGASPLGN-VFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLGKAPKAAGVPRNEYIVSTKCGRYVDGFDF----SAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLE 559
            +E   + +TG+  S +G G   +G  ++G   E  ++ ++R A   GI   DT+P YG   SE+++GKA K  G  R++ I++TK              +  R+   ++ SL RLQ DY+D+ Q H   +      + ET   +++  +AGKIR IG++   +E
Sbjct:    1 MEYTSIADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFGQSEEIVGKAIKEYG-KRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVH---WPDPLVPIEETAEVMKELYDAGKIRAIGVSNFSIE 160          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: PLD_MICLT (Pyridoxal 4-dehydrogenase OS=Microbacterium luteolum GN=pld1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 69/249 (27.71%), Postives = 107/249 (42.97%), Query Frame = 2
Query:   74 LRKLELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASVREAFRLGINFFDTSPYYGGTLSEKMLG----KAPKAAGVPRNEYIVSTKCGR-----------------------------YVDGFDFSAERVTRSIDESLARLQLDYVDILQCHDI---------EFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE-DLLPYLKSKGVGV 691
            L+  E R LG TGL ++ +G G +PLG ++  VS  DA A +   +  GI +FD++P YG    E +LG    + P+ A       ++STK GR                             + + FD+S + V RS D+S  RL    +D+L  HDI         EF            AL + + AG I+     GL +  +  + D +    +D  L    YS+ D   E + LP  + +G+ +
Sbjct:    3 LKASEKRALGRTGLTVTALGLGTAPLGGLYAPVSRADADALLEAGWDSGIRYFDSAPMYGYGRCEHLLGDMLREKPERA-------VISTKVGRLMTNERAGRTLPPAPPKNPLDSGWHNGLNFREVFDYSYDGVMRSFDDSQQRLGFPEIDLLYVHDIGRVTHADRHEFHWNALTRGGGFRALTELRAAGNIKGF---GLGVNEWQIIRDALEEADLDCSLLAGRYSLLDQVSEKEFLPLAQKRGMAL 241          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: YGHZ_ECOLI (Uncharacterized protein yghZ OS=Escherichia coli (strain K12) GN=yghZ PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 63/224 (28.12%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   53 LIQMAFPLR--KLELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASV-REAFRLGINFFDTSPYYG---GTLSEKMLGKAPKAAGVPRNEYIVSTKCGRYV----DGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE--DLLPYLKSKGVG 688
            ++ +A P R  +++ R  G +GLRL  +  G   L + FG V+  ++  ++ R+AF LGI  FD +  YG   G+  E       +     R+E I+STK G  +     G   S + +  S+D+SL R+ L+YVDI   H ++  +    + ET  AL    ++GK  ++GI+    E    M++ +    + +++    Y++ +  ++   LL  L++ GVG
Sbjct:    1 MVWLANPERYGQMQYRYCGKSGLRLPALSLG---LWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENT---PMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG 218          
BLAST of FC932344 vs. ExPASy Swiss-Prot
Match: YGHZ_ECO57 (Uncharacterized protein yghZ OS=Escherichia coli O157:H7 GN=yghZ PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.271e-11
Identity = 63/224 (28.12%), Postives = 113/224 (50.45%), Query Frame = 2
Query:   53 LIQMAFPLR--KLELRPLGNTGLRLSCVGFGASPLGNVFGAVSENDAVASV-REAFRLGINFFDTSPYYG---GTLSEKMLGKAPKAAGVPRNEYIVSTKCGRYV----DGFDFSAERVTRSIDESLARLQLDYVDILQCHDIEFGSLDQIVNETIPALQKQKEAGKIRFIGITGLPLEIFTYMLDRVPPGAVDVILSYCHYSINDSTLE--DLLPYLKSKGVG 688
            ++ +A P R  +++ R  G +GLRL  +  G   L + FG V+  ++  ++ R+AF LGI  FD +  YG   G+  E       +     R+E I+STK G  +     G   S + +  S+D+SL R+ L+YVDI   H ++  +    + ET  AL    ++GK  ++GI+    E    M++ +    + +++    Y++ +  ++   LL  L++ GVG
Sbjct:    1 MVWLANPERYGQMQYRYCGKSGLRLPALSLG---LWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENT---PMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG 218          
The following BLAST results are available for this feature:
BLAST of FC932344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
YAJO_ECOLI1.830e-1832.55Uncharacterized oxidoreductase yajO OS=Escherichia... [more]
ARA2_YEAST3.452e-1733.96D-arabinose 1-dehydrogenase OS=Saccharomyces cerev... [more]
YCCK_BACSU4.508e-1732.85Uncharacterized oxidoreductase yccK OS=Bacillus su... [more]
YQKF_BACSU1.312e-1629.61Uncharacterized oxidoreductase yqkF OS=Bacillus su... [more]
IOLS_BACSU1.713e-1630.20Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=... [more]
YDJG_ECOLI6.510e-1631.34Uncharacterized oxidoreductase ydjG OS=Escherichia... [more]
GS69_BACSU3.572e-1430.49General stress protein 69 OS=Bacillus subtilis GN=... [more]
PLD_MICLT1.357e-1327.71Pyridoxal 4-dehydrogenase OS=Microbacterium luteol... [more]
YGHZ_ECOLI1.271e-1128.13Uncharacterized protein yghZ OS=Escherichia coli (... [more]
YGHZ_ECO571.271e-1128.13Uncharacterized protein yghZ OS=Escherichia coli O... [more]

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Properties
Property NameValue
Genbank descriptionC34207F03EF PostHarveN Citrus clementina cDNA clone C34207F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932344 ID=FC932344; Name=FC932344; organism=Citrus clementina; type=EST; length=692bp
TATTCTCACAAAATTTTTCCCACTTCCCAAACGCCTCTCAGAAGCCCTAA
ACTTAATTCAAATGGCATTCCCACTTCGCAAATTAGAGCTCCGACCATTG
GGCAACACGGGCCTCCGCCTCAGTTGCGTCGGCTTCGGCGCCTCGCCGCT
CGGCAACGTTTTTGGGGCCGTCTCTGAAAACGACGCCGTTGCCTCCGTCC
GCGAAGCATTTCGCCTTGGCATCAACTTCTTTGACACTTCTCCATATTAT
GGAGGGACATTGTCTGAGAAGATGCTTGGTAAGGCACCGAAAGCTGCGGG
CGTTCCGAGAAATGAGTATATTGTGTCAACAAAATGCGGGCGGTATGTTG
ACGGTTTTGATTTTAGTGCTGAGAGAGTGACTAGGAGCATTGATGAGAGC
TTGGCGAGGTTGCAGCTTGATTACGTCGATATACTGCAGTGCCATGACAT
TGAATTTGGGTCTCTTGACCAGATTGTGAATGAGACCATTCCTGCCCTTC
AGAAGCAGAAGGAAGCAGGGAAAATCCGTTTCATTGGTATTACCGGACTT
CCCTTGGAAATTTTTACCTACATGCTTGATCGGGTGCCACCTGGTGCAGT
TGATGTAATTCTTTCGTACTGCCATTACAGTATTAATGATTCAACATTGG
AGGATTTACTGCCTTACTTGAAGAGCAAGGGTGTAGGCGTCA
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