FC932346

Overview
NameFC932346
Unique NameFC932346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:100..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.394e-90
Identity = 164/193 (84.97%), Postives = 176/193 (91.19%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVI 637
            MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYSTFE EL D IPVVKTSI G RIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VAL HTDLD+ETEE+IADVLGVEVF QT+AGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTL QVPLVAGTVNRGSEVI
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 327.791 bits (839), Expect = 3.496e-89
Identity = 160/210 (76.19%), Postives = 179/210 (85.24%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+L QVPLVAGTVNRGSEVI AG  VNDW AFCG DT
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDT 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.735e-88
Identity = 158/210 (75.24%), Postives = 178/210 (84.76%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+L QVPLVAGTVNRGSEVI AG  VNDW AFCG DT
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDT 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 3.272e-87
Identity = 156/210 (74.29%), Postives = 176/210 (83.81%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MA R  FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE EL   IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+L QVPLVAGTVNRGSEVI AG  VNDW AFCG DT
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDT 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.582e-87
Identity = 155/213 (72.77%), Postives = 179/213 (84.04%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIGR+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQT++GNILVGSYCS SN+GGLVHP TS++D +ELS+L QVPLVAGTVNRGS V+GAG  VND+ A  G DT  P
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAP 213          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.796e-85
Identity = 153/210 (72.86%), Postives = 178/210 (84.76%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MA R  FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T+IGG RIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEEIIADVL VEVFRQTVAGN+L GSYC+ SN+G LVHP TSI++ DELS+L QVPLVAGT+NRGS+VIGAG  VNDW AF G DT
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDT 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 309.686 bits (792), Expect = 9.853e-84
Identity = 152/210 (72.38%), Postives = 178/210 (84.76%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIGRL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEEIIADVL VEVFRQT+A N LVGSY   SN+GG+VHP TSI+D DELS+L QVPLVAGTVNRGSEV+ AG  VNDW +F G +T
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNT 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.341e-83
Identity = 152/210 (72.38%), Postives = 173/210 (82.38%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MATRL +ENSC+VGVF KLTN +CLV   GS+ F  T E  L D IPVV+TSI G RI+GRL  GNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEEIIADVLGVEVFRQTV+GN+LVG+YC+ +N+G LVHP TSI D DELS+L QVPLVAGTVNRG+E + AG  VNDWTA  G+DT
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADT 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.573e-81
Identity = 149/212 (70.28%), Postives = 180/212 (84.91%), Query Frame = 2
Query:   59 MATRLMFENS-CEVGVFSKLTNAFCLV-AIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MATRL ++N+ CE+GVFSKLTNA+CLV A   S +F++ +E++L  VIP+V TSIGG+  IG LCVGNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEEII+DVLGVEV+RQT+A N LVGSYCS SN GG+VH +T++E++ EL+ L QVPLVAGTVNRGS+VI AG TVNDWTAFCGSDT
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDT 212          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.565e-71
Identity = 128/210 (60.95%), Postives = 164/210 (78.10%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            MA R+ +E S +VGVF  LTN++CLV +GG+++FYS  EAEL+D+IPVV TSI   RI+GRL VGN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ L Q+P+VAGT NRGSE+IGAG  VNDW AFCG D+
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDS 210          
The following BLAST results are available for this feature:
BLAST of FC932346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_BETVU5.394e-9084.97Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_MOUSE3.496e-8976.19Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN1.735e-8875.24Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN3.272e-8774.29Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_YEAST5.582e-8772.77Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_SCHPO1.796e-8572.86Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME9.853e-8472.38Probable eukaryotic translation initiation factor ... [more]
IF6_DICDI8.341e-8372.38Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH1.573e-8170.28Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL9.565e-7160.95Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC34207F05EF PostHarveN Citrus clementina cDNA clone C34207F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932346 ID=FC932346; Name=FC932346; organism=Citrus clementina; type=EST; length=705bp
GTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAAT
TTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGT
GTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTC
TGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAACAGATGTTATTCCTG
TTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTT
GGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGAGCT
TCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAGCGTATTG
AAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATGTT
GCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCAGA
TGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAATATCCTTG
TTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTCAT
ACATCCATTGAAGACTTGGATGAACTCTCTACACTCTCGCAAGTACCTTT
GGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTTTA
CTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACACGGCAACCGAAC
TCTCT
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