FC932370

Overview
NameFC932370
Unique NameFC932370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932370 vs. ExPASy Swiss-Prot
Match: MAF1_BOVIN (Repressor of RNA polymerase III transcription MAF1 homolog OS=Bos taurus GN=MAF1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 3
Query:  249 SAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVNGSTYEEDGEIFDDMDM 632
            S  ++H+F  E S +         +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        ++GSTY    E  +++DM
Sbjct:  111 STARSHEFSREPSLSWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTY-TPSEAGNELDM 222          
BLAST of FC932370 vs. ExPASy Swiss-Prot
Match: MAF1_HUMAN (Repressor of RNA polymerase III transcription MAF1 homolog OS=Homo sapiens GN=MAF1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  249 SAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVNGSTYEEDGEIFDDMDM 632
            S  ++H+F  E S +         +F A +E         L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        ++GSTY    E  +++DM
Sbjct:  111 STARSHEFSREPSLSWVVNAVNCSLFSAVRE-----DFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTY-TPSEAGNELDM 222          
BLAST of FC932370 vs. ExPASy Swiss-Prot
Match: MAF1_RAT (Repressor of RNA polymerase III transcription MAF1 homolog OS=Rattus norvegicus GN=Maf1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  249 SAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVNGSTY--EEDGEIFD 620
            S  ++H+F  E S           +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        ++GSTY   E G   D
Sbjct:  111 STARSHEFSREPSLRWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTYTPSEAGNALD 221          
BLAST of FC932370 vs. ExPASy Swiss-Prot
Match: MAF1_MOUSE (Repressor of RNA polymerase III transcription MAF1 homolog OS=Mus musculus GN=Maf1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  249 SAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVNGSTY--EEDGEIFD 620
            S  ++H+F  E S           +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        ++GSTY   E G   D
Sbjct:  111 STARSHEFSREPSLRWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTYTPSEAGNALD 221          
BLAST of FC932370 vs. ExPASy Swiss-Prot
Match: MAF1_XENLA (Repressor of RNA polymerase III transcription MAF1 homolog OS=Xenopus laevis GN=maf1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  249 SAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVNGSTYEE-DGEIFDDMDM 632
            SA +AH+F  E S N       + +  A  +       +SL   L+ A+DE + L EC+IYSYNPD D DPF E G +WSFN+FFYN+KLKR+V   FSC S        ++G TY   D     DMD+
Sbjct:  110 SAARAHEFSREPSLNWVVNAVNSSLVSALGD-----DFTSLRPNLWDAVDEEINLSECDIYSYNPDLDCDPFGEDGNLWSFNYFFYNKKLKRIVF--FSCRS--------ISGYTYTHCDAGAELDMDL 223          
BLAST of FC932370 vs. ExPASy Swiss-Prot
Match: MAF1_DANRE (Repressor of RNA polymerase III transcription MAF1 homolog OS=Danio rerio GN=maf1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  249 SAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVA 566
            S  K H F  E S N    +F       S    E Y  S L   L++ALD+ + L EC+IYSYNPD DSDP+ E+G +WSFN+FFYN++LKR+V F    +S  +A
Sbjct:  110 SRTKGHDFSKEPSVNW---VFNAVNSSLSAAAGEAY--SHLQPQLWEALDKEISLAECDIYSYNPDLDSDPYGEEGNLWSFNYFFYNKRLKRIVFFTCRSVSLFMA 210          
The following BLAST results are available for this feature:
BLAST of FC932370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MAF1_BOVIN3.042e-1841.41Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_HUMAN3.973e-1841.41Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_RAT6.777e-1842.06Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_MOUSE6.777e-1842.06Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_XENLA1.156e-1742.64Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_DANRE2.575e-1745.28Repressor of RNA polymerase III transcription MAF1... [more]
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Properties
Property NameValue
Genbank descriptionC34207H06EF PostHarveN Citrus clementina cDNA clone C34207H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932370 ID=FC932370; Name=FC932370; organism=Citrus clementina; type=EST; length=683bp
AGTGGGAGTGTTGTCAAAAGGTTTGACAGACAGTTTCTAAAACTGTTGCT
CTAGGAGCTGAGAGTTCAAGTCTCTCCATTTCCCAAATCTTATTCTGGCC
ATTTGTGTTGGATTTTGTCTGCTTCTACCATTTCAGTATTACGATTCTAC
TCACATTAGCATTATGAATTGCATCTGCTTATGTACTAATGTGTGGGGGT
TATGTTGTGATTTCCTATTATTATTATTCTTTGCATTTTTTGGTTCCTAG
TGCTGTGAAAGCACACCAGTTCTTCACAGAGGAAAGCTGGAACACTTTTA
AGCAGATCTTTGAGACCTACATGTTTGAAGCTTCAAAGGAATGGAGTGAG
ACATACGGAGGCAGTTCCCTTCTGGAAACATTATACAAGGCTTTGGATGA
GGTTGTGAAGTTACCTGAATGTGAAATTTACAGTTACAATCCAGATTCTG
ATTCAGACCCATTCCTTGAGAAAGGAGCAATATGGTCTTTCAATTTCTTC
TTCTACAACAGAAAACTAAAGCGTGTTGTCAGTTTCCGGTTTTCTTGCTT
AAGTAATTTGGTGGCGGAGGGATTTCTAGTCAATGGCTCAACTTACGAAG
AAGATGGAGAAATATTTGATGACATGGACATGTGAATACTAACAAACTTA
TGCTGTTAGTGCAATGTTTATATGTCAATACTC
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