FC932431

Overview
NameFC932431
Unique NameFC932431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA2_BOVIN (Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 72/152 (47.37%), Postives = 101/152 (66.45%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENA 532
            P +GQT+++VYI +CS++G++SV   K LGIA+K  F G   L +P TWI  + ++VCV TQ+NYLN+ALD FNT++V+PIYYV FT+  I  S I+FK+W       ++  + GF TI+ G FLLH  KD V  S +S+ +   K  DE A
Sbjct:  171 PRHGQTNILVYITICSVIGAVSVSCAKGLGIAIKELFAGKPVLQHPLTWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVITCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD-VSFSLSSLPVSFRK--DEKA 319          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA2_PONAB (Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENA 532
            P +GQT+++VYI +CS++G+ SV  VK LGIA+K  F G   L +P  WI  + ++VCV TQ+NYLN+ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FLLH  KD V  S AS+ +   K  DE A
Sbjct:  171 PRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD-VSFSLASLPVSFRK--DEKA 319          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA2_HUMAN (Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.241e-33
Identity = 72/152 (47.37%), Postives = 100/152 (65.79%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENA 532
            P +GQT+++VYI +CS++G+ SV  VK LGIA+K  F G   L +P  WI  + ++VCV TQ+NYLN+ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FLLH  KD V  S AS+ +   K  DE A
Sbjct:  171 PRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELFAGKPVLRHPLAWILLLSLIVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD-VSFSLASLPVSFRK--DEKA 319          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA2_MOUSE (Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASIQMRMSKHSDENA 532
            P +GQT+++VYI +CS++G+ SV  VK LGIA+K    G   L +P  WI    ++VCV TQ+NYLN+ALD FNT++V+PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G FLLH  KD V  S AS+ +   K  DE A
Sbjct:  171 PRHGQTNILVYITICSVIGAFSVSCVKGLGIAIKELLAGKPVLQHPLAWILLFSLVVCVSTQINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKD-VSFSLASLPVSFRK--DEKA 319          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA4_HUMAN (Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 62/140 (44.29%), Postives = 100/140 (71.43%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDAVDGSSASI 496
            P YGQ ++++YI +CS++G+ SV +VK LGI +K  F+G+  + +P  +I ++I+ + + TQ+N+LN+ALD FNT++V PIYYV FT++ + +S+I+FK+W   +   I   + GFVTI+ G F+LH  KD +D S AS+
Sbjct:  279 PRYGQRNILIYIIICSVIGAFSVAAVKGLGITIKNFFQGLPVVRHPLPYILSLILALSLSTQVNFLNRALDIFNTSLVFPIYYVFFTTVVVTSSIILFKEWYSMSAVDIAGTLSGFVTIILGVFMLHAFKD-LDISCASL 417          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA4_MOUSE (Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 57/131 (43.51%), Postives = 95/131 (72.52%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 469
            P YGQ ++++YI +CS++GS SV +VK LG+ ++  F+G+  + +P  +I ++I+ + +I Q+N+LN+ALD FNT++V PIYYV FT++ + +S+++FK+W   +   IV  + GFVTI+ G F+LH  KD
Sbjct:  219 PRYGQRNILIYIIICSVIGSFSVTAVKGLGVTIRNFFQGLPVVRHPLPYILSLILGLSIIIQVNFLNRALDIFNTSLVFPIYYVFFTTVVVASSIVLFKEWYTMSAVDIVGTLSGFVTIILGVFMLHAFKD 349          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA3_PONAB (Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 62/131 (47.33%), Postives = 90/131 (68.70%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 469
            P+ GQT+++VYI +CSL+G+ SV SVK LGIA+K   E      +P  ++   ++++ V TQ+NYLNKALDTFNT++V+PIYYV FTS+ +  S I+F++W       I+  + GF TI+ G FLLH  K+
Sbjct:  229 PKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSIVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKN 359          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA3_HUMAN (Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.678e-30
Identity = 67/157 (42.68%), Postives = 102/157 (64.97%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA----VDGSSASIQMRMSKHSDENAY 535
            P+ GQT+++VYI +CSL+G+ SV SVK LGIA+K   E      +P  ++   ++++ V TQ+NYLNKALDTFNT++V+PIYYV FTS+ +  S I+F++W       I+  + GF TI+ G FLLH  K+      + +S + +  +S + +EN Y
Sbjct:  229 PKKGQTNILVYISICSLIGAFSVSSVKGLGIAIKELIEWKPVYKHPLVFVLLAVLVLSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKNTDITWSELTSTAKKEAVSLNVNENNY 385          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA3_MOUSE (Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 67/157 (42.68%), Postives = 101/157 (64.33%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALKLTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKDA----VDGSSASIQMRMSKHSDENAY 535
            P+ GQT+++VYI +CSL+G+ SV SVK LGIA+K   E       P  +I   ++ + V TQ+NYLNKALDTFNT++V+PIYYV FTS+ +  S I+F++W       I+  + GF TI++G FLLH  K+      +  S + +  +S + ++N+Y
Sbjct:  229 PKKGQTNILVYIAICSLIGAFSVSSVKGLGIAIKELLERKPVYKDPLFFILLTMLALSVTTQINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKAGDIIGTLSGFFTIINGIFLLHAFKNTNITWSELMSTAKKEALSPNGNQNSY 385          
BLAST of FC932431 vs. ExPASy Swiss-Prot
Match: NIPA1_MOUSE (Magnesium transporter NIPA1 OS=Mus musculus GN=Nipa1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 2
Query:   77 PEYGQTHVMVYIGVCSLVGSLSVMSVKALGIALK--LTFEGMNQLIYPQTWIFTMIVLVCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEICGFVTILSGTFLLHKTKD 469
            P +G T++MVYI +CSL+GS +V S K +G+A +  L     +Q       +   ++   +I Q  Y+NKAL+ F+++V   IYYV+FT+L +LAS I+F++W        +   CGF T+  G  L+   K+
Sbjct:  175 PAHGPTNIMVYISICSLLGSFTVPSTKGIGLAAQDILHNNPSSQRALCLCLVLLAVLGCSIIVQFRYINKALECFDSSVFGAIYYVVFTTLVLLASAILFREWSNVGLVDFLGMACGFTTVSVGIVLIQVFKE 307          
The following BLAST results are available for this feature:
BLAST of FC932431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NIPA2_BOVIN9.506e-3447.37Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2... [more]
NIPA2_PONAB1.241e-3347.37Magnesium transporter NIPA2 OS=Pongo abelii GN=NIP... [more]
NIPA2_HUMAN1.241e-3347.37Magnesium transporter NIPA2 OS=Homo sapiens GN=NIP... [more]
NIPA2_MOUSE1.373e-3246.71Magnesium transporter NIPA2 OS=Mus musculus GN=Nip... [more]
NIPA4_HUMAN5.767e-3144.29Magnesium transporter NIPA4 OS=Homo sapiens GN=NIP... [more]
NIPA4_MOUSE1.285e-3043.51Magnesium transporter NIPA4 OS=Mus musculus GN=Nip... [more]
NIPA3_PONAB1.285e-3047.33Magnesium transporter NIPA3 OS=Pongo abelii GN=NIP... [more]
NIPA3_HUMAN1.678e-3042.68Magnesium transporter NIPA3 OS=Homo sapiens GN=NIP... [more]
NIPA3_MOUSE6.376e-3042.68Magnesium transporter NIPA3 OS=Mus musculus GN=Nip... [more]
NIPA1_MOUSE2.969e-1936.09Magnesium transporter NIPA1 OS=Mus musculus GN=Nip... [more]

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Properties
Property NameValue
Genbank descriptionC34208E07EF PostHarveN Citrus clementina cDNA clone C34208E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932431 ID=FC932431; Name=FC932431; organism=Citrus clementina; type=EST; length=711bp
GGCAACGGAGCCAGCTTTTCTCCTGTATGCAGCTTTGGTTCTAGTTGCAG
TTTTTGTACTCGTCGTTCAATTCGTACCAGAGTATGGGCAGACGCATGTA
ATGGTCTACATTGGAGTTTGTTCACTTGTGGGCTCACTGTCGGTTATGAG
CGTTAAGGCTCTTGGAATTGCTCTAAAGTTAACATTTGAAGGAATGAATC
AGTTAATATATCCTCAAACATGGATATTTACCATGATCGTGCTTGTCTGT
GTAATTACTCAAATGAACTATTTGAACAAGGCTCTTGATACGTTCAACAC
GGCTGTTGTATCACCTATATACTATGTGATGTTTACATCATTAACTATTC
TGGCCAGTGTAATCATGTTTAAGGATTGGGATAGACAAAATCCGACTCAA
ATTGTCACGGAAATATGTGGGTTTGTCACGATTCTTTCTGGGACTTTTCT
TCTTCACAAAACAAAAGACGCAGTTGATGGTTCATCAGCATCTATCCAAA
TGCGCATGTCTAAGCACTCAGACGAGAATGCTTATGATCCCGAAGGTATG
CCTCTAAGGCGTCAAGACAACATGCGCCCGTCATAGTTGTATATTTTTGG
TTCATATCCTCAATGTCTTGCACGCTTTTGCGGAGGCATTGCTGCCATCG
ACCTGTATATTCCACATTCCTGACGTGTTGTGCTGCCCCTGCACAACTTT
TTATAAAAATG
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