FC932473

Overview
NameFC932473
Unique NameFC932473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15299 contig Ccv1_Contig15299:3..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 3.619e-95
Identity = 157/183 (85.79%), Postives = 173/183 (94.54%), Query Frame = 1
Query:  124 MSNSAIDVPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 672
            MS S++D+P +GGFSFDLC+RNDML +KG+  PSF KTGTTIVGLIF+DGVILGADTRATEGPIV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRVVTALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+KYK+
Sbjct:    1 MSQSSVDIPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKE 183          

HSP 2 Score: 39.2762 bits (90), Expect = 3.619e-95
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 3
Query:  660 KIQESLTKDEGIQLVVDAICSGIF 731
            K +E LT+DEGI+LV +AICSGIF
Sbjct:  180 KYKEGLTRDEGIKLVAEAICSGIF 203          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 1.048e-94
Identity = 157/183 (85.79%), Postives = 172/183 (93.99%), Query Frame = 1
Query:  124 MSNSAIDVPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYKK 672
            MS S +DVP +GGFSFDLC+RNDML +KG+  PSF KTGTTIVGLIF+DGVILGADTRATEGPIV DKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQL+LHRY TGR+SRV+TALTLLKKHLF+YQG+V AALVLGGVD TGPHLHTIYPHGSTDTLPFATMGSGSLAAM++FE+KYK+
Sbjct:    1 MSQSTVDVPPKGGFSFDLCKRNDMLTQKGLKAPSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFEAKYKE 183          

HSP 2 Score: 38.1206 bits (87), Expect = 1.048e-94
Identity = 16/24 (66.67%), Postives = 21/24 (87.50%), Query Frame = 3
Query:  660 KIQESLTKDEGIQLVVDAICSGIF 731
            K +E LT+DEGI+LV ++ICSGIF
Sbjct:  180 KYKEGLTRDEGIKLVAESICSGIF 203          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.879e-73
Identity = 120/173 (69.36%), Postives = 150/173 (86.71%), Query Frame = 1
Query:  151 SRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            +RGGF FDLC RN++L K G+ +  F KTGTTIVG++++ GV+LGADTRATEGPIV DKNCEKIHY+A NIYCCGAGTAADTE+ T ++SS+L+LH+  TG+++RV+TALT+LK+ LF YQG++ AAL+LGG+D  GP LHTIYPHGSTD LP+ TMGSGSLAAMA+FE+KYK
Sbjct:    5 NRGGFDFDLCNRNNVLEKTGLRMKGFMKTGTTIVGVVYKGGVVLGADTRATEGPIVADKNCEKIHYIADNIYCCGAGTAADTESATALISSKLKLHKLSTGKQTRVITALTMLKQMLFKYQGHISAALILGGIDINGPSLHTIYPHGSTDQLPYVTMGSGSLAAMAVFEAKYK 177          

HSP 2 Score: 29.261 bits (64), Expect = 8.879e-73
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 3
Query:  660 KIQESLTKDEGIQLVVDAICSGIF 731
            K +  +TK+E I LV +AI SGIF
Sbjct:  175 KYKNDMTKEEAIALVAEAISSGIF 198          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 6.750e-67
Identity = 122/185 (65.95%), Postives = 149/185 (80.54%), Query Frame = 1
Query:  133 SAIDVPSR--GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            +A+ V  R  GGFSFD CRRN +L    AKKG  LP+ RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++
Sbjct:    2 AAVSVYERPVGGFSFDNCRRNAILEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 186          

HSP 2 Score: 23.483 bits (49), Expect = 6.750e-67
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  660 KIQESLTKDEGIQLVVDAICSGIF 731
            K +  + ++E  QLV +AI +GIF
Sbjct:  184 KFRPEMEEEEAKQLVSEAIAAGIF 207          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.261e-66
Identity = 120/186 (64.52%), Postives = 148/186 (79.57%), Query Frame = 1
Query:  124 MSNSAIDVPSRGGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            M+  ++  P  GGFSFD CRRN +L    AK+G  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++
Sbjct:    1 MAAVSVYAPPVGGFSFDNCRRNAVLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 186          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.647e-66
Identity = 121/186 (65.05%), Postives = 148/186 (79.57%), Query Frame = 1
Query:  124 MSNSAIDVPSRGGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            M+  ++  P  GGFSFD CRRN +L    AKKG  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++
Sbjct:    1 MAAVSVFQPPVGGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 186          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.151e-66
Identity = 122/185 (65.95%), Postives = 149/185 (80.54%), Query Frame = 1
Query:  133 SAIDVPSR--GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            +A+ V  R  GGFSFD CRRN +L    AKKG  LP+ RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++
Sbjct:    2 AAVSVYERPVGGFSFDNCRRNAVLEADFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 186          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.792e-66
Identity = 119/175 (68.00%), Postives = 143/175 (81.71%), Query Frame = 1
Query:  157 GGFSFDLCRRNDML----AKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            GGFSFD CRRN +L    AKKG  LP  RKTGTTI G++++DG++LGADTRATEG +V DKNC KIH+++PNIYCCGAGTAADT+  T ++SS L+LH   TGR  RVVTA  +LK+ LF YQGY+ AALVLGGVD TGPHL++IYPHGSTD LP+ TMGSGSLAAMA+FE K++
Sbjct:   12 GGFSFDNCRRNAVLEADFAKKGFKLPKARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR 186          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.310e-57
Identity = 103/175 (58.86%), Postives = 135/175 (77.14%), Query Frame = 1
Query:  145 VPSRGGFSFDLCRRNDMLAKKGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            +  R GF F+  +RN +L +KG   P    TGTTIVG+I +D ++LGADTRAT GPI+ DKNC+K+H ++PNI+C GAGTAADTE VT M+SS ++LH  +T R+ RVVTALT+LK+HLF YQG++ A LVLGG DC GPHL TI  HGS+D LP+  +GSGSLAA+++ E+KY+
Sbjct:    4 INERKGFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQ 178          
BLAST of FC932473 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.467e-54
Identity = 100/174 (57.47%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  154 RGGFSFDLCRRNDMLAK--KGVNLPSFRKTGTTIVGLIFQDGVILGADTRATEGPIVCDKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLKKHLFNYQGYVQAALVLGGVDCTGPHLHTIYPHGSTDTLPFATMGSGSLAAMAMFESKYK 669
            RGGFSF+ C+RN  L +   G+ +P  RKTGTTI GL+FQDGVILGADTRAT   +V DK+CEKIH++AP IYCCGAG AAD E  T MV+S+++LH   TGRE RV T   +L++ LF YQG+V A+L++GGVD TGP L+ ++PHGS   LPF  +GSG  AA+A+ E +++
Sbjct:    9 RGGFSFENCQRNASLERVLPGLKVPHARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASLIVGGVDLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQ 182          
The following BLAST results are available for this feature:
BLAST of FC932473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSB7B_ARATH3.619e-9585.79Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH1.048e-9485.79Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_DICDI8.879e-7369.36Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7_PIG6.750e-6765.95Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_HUMAN1.261e-6664.52Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB7_MOUSE1.647e-6665.05Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_BOVIN2.151e-6665.95Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_RAT4.792e-6668.00Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_SCHPO5.310e-5758.86Probable proteasome subunit beta type-7 OS=Schizos... [more]
PSB10_HUMAN2.467e-5457.47Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34209A03EF PostHarveN Citrus clementina cDNA clone C34209A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932473 ID=FC932473; Name=FC932473; organism=Citrus clementina; type=EST; length=763bp
GTTTCGTTTTAAGTTTTTAAGACTCGAAGTCGCTCGCTGTCGCTCGCTGT
CGCTGCTGCTCTCCAAAGCTCACGCCTTGTTTTCATTCCAGTGGGATCAA
TCTCAGGTTGGAGAAAGTTTAAAATGTCAAACTCTGCAATAGATGTTCCT
TCCAGGGGTGGATTTAGTTTTGATCTCTGCCGGCGGAATGATATGCTTGC
AAAGAAGGGTGTCAACCTTCCATCTTTCCGAAAGACGGGGACGACCATTG
TTGGGTTGATTTTCCAGGATGGCGTCATTCTTGGGGCAGATACCAGAGCA
ACTGAAGGACCCATAGTTTGCGATAAGAATTGTGAGAAAATTCATTACAT
GGCTCCAAACATATATTGTTGTGGTGCAGGAACTGCTGCTGACACAGAGG
CTGTAACTGACATGGTCAGCTCACAGCTGCAGTTACATCGTTATCATACT
GGTAGAGAGTCAAGGGTTGTTACAGCACTGACTCTTCTCAAGAAGCACCT
TTTCAACTACCAAGGTTATGTGCAAGCTGCTTTGGTTCTTGGTGGAGTTG
ATTGCACTGGACCTCATCTTCACACAATATATCCACATGGTTCAACTGAC
ACTTTGCCATTTGCGACAATGGGTTCTGGTTCTCTTGCTGCCATGGCTAT
GTTTGAATCAAAATACAAGAAAGCCTGACTAAAGATGAGGGAATACAGCT
AGTTGTGGACGCCATTTGCTCTGGTATATTCATGACTTGGGAGTGGAAGC
ATGNTGATGTCTG
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