FC932481
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14 Identity = 58/211 (27.49%), Postives = 92/211 (43.60%), Query Frame = 1 Query: 61 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693 ++FFLS + K LS+ + + + S S V + S+ K+Y + L A MR+ + A + P LC+AACEL GG S +H++LP D L + KPT + F + +L DA+L F E +A++ G +S RI+RV+ E+ + +GS+G+V GQ Sbjct: 15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQ 218
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14 Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = 1 Query: 229 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693 KSY I L A MR+ + A + PALC+AACELVGG+ S IH++LP D L + KPT + F + +L DA+L F E +A S +S RI+R + E+ +A+G++G+V GQ Sbjct: 80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQ 231
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14 Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1 Query: 319 MRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693 MR+ + A + P LC+AACELVGG S IH++LP D L + KPT + F + +L DA+L F E LAS+ + + R++R + E+ +A+G++G+V GQ Sbjct: 107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQ 230
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13 Identity = 52/189 (27.51%), Postives = 82/189 (43.39%), Query Frame = 1 Query: 148 PRRNHSRPSLSYRPMMVTMAMSTPNKN----KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYM 699 P + H+ P + + + S P ++YWT++ +I L +A MR+ V A AP +CVAACEL GG R S IH++LP D + + KP+ + + +L DA+ P + + S P ILR++ E+ R +GS G+ GQY+ Sbjct: 17 PEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYV 204
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13 Identity = 54/197 (27.41%), Postives = 88/197 (44.67%), Query Frame = 1 Query: 142 VAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693 + P+ N RP + P+ V+ +T P K Y T + L +A MR+ + A + P LC+AACELVGG++E S IH++LP D L + KPT + + + +L D++L F E + +S AG RI+ + E+ +++G++G+V GQ Sbjct: 40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAGQ 230
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13 Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1 Query: 319 MRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693 MR+ + A + P LC+AACELVGG S IH++LP D L + KPT + + + +L DA+L F E LAS+ + + + R++R + E+ +A+G++G+V GQ Sbjct: 103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQ 225
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.753e-11 Identity = 45/155 (29.03%), Postives = 70/155 (45.16%), Query Frame = 1 Query: 229 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693 K Y S E I L +A MR+ + A + P LC+AACELVGG S I ++LP D L + KPT + F + +L A+L E L +D +S +++R + E+ +++G++G+V GQ Sbjct: 82 KPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDL-RRGKPTTHKVFGESVAILSGGALLALAFEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQ 231 The following BLAST results are available for this feature:
BLAST of FC932481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932481 ID=FC932481; Name=FC932481; organism=Citrus clementina; type=EST; length=762bpback to top |