FC932481

Overview
NameFC932481
Unique NameFC932481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932481_ssr417 microsatellite FC932481_ssr417:417..428. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932481_ssr717 microsatellite FC932481_ssr717:717..728. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14287 contig Ccv1_Contig14287:4..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 58/211 (27.49%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   61 VNFFLSICLLKSAPMAKALSVLNLPAHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693
            ++FFLS  + K       LS+    + +  +      S S     V  + S+    K+Y       +   L  A            MR+ + A    + P LC+AACEL GG                  S +H++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A++    G +S RI+RV+ E+ + +GS+G+V GQ
Sbjct:   15 ISFFLSGTIRKPIFSCSRLSI----SAIITKEQTQEESESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATK--GVSSERIVRVVGELAKCIGSEGLVAGQ 218          
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  229 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693
            KSY       I   L  A            MR+ + A    + PALC+AACELVGG+                 S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E +A S      +S RI+R + E+ +A+G++G+V GQ
Sbjct:   80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQ 231          
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 43/125 (34.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:  319 MRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  F  +  +L  DA+L F  E LAS+ +    +  R++R + E+ +A+G++G+V GQ
Sbjct:  107 MRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQ 230          
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGR_ARATH (Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 52/189 (27.51%), Postives = 82/189 (43.39%), Query Frame = 1
Query:  148 PRRNHSRPSLSYRPMMVTMAMSTPNKN----KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAP-ALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYM 699
            P + H+ P       + + + S P       ++YWT++  +I   L +A            MR+ V A     AP  +CVAACEL GG R                S IH++LP  D    + + KP+ +  +     +L  DA+ P   + + S   P       ILR++ E+ R +GS G+  GQY+
Sbjct:   17 PEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDP-VRRGKPSNHTVYGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYV 204          
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 54/197 (27.41%), Postives = 88/197 (44.67%), Query Frame = 1
Query:  142 VAPRRNHSRPSLSYRPMMVTMAMST-------------PNKNKSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693
            + P+ N  RP   + P+ V+   +T             P   K Y T     +   L +A            MR+ + A    + P LC+AACELVGG++E               S IH++LP  D   L  + KPT +  +  +  +L  D++L F  E + +S   AG    RI+  + E+ +++G++G+V GQ
Sbjct:   40 INPKLNKKRP---FSPLTVSAIATTKEDERIEAAQTEEPFNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKIYGEDVAVLAGDSLLAFAFEHIVNS--TAGVTPSRIVGAVAELAKSIGTEGLVAGQ 230          
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 42/125 (33.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  319 MRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693
            MR+ + A    + P LC+AACELVGG                  S IH++LP  D   L  + KPT +  +  +  +L  DA+L F  E LAS+ + +  +  R++R + E+ +A+G++G+V GQ
Sbjct:  103 MRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDL-RRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATS-SEVSPARVVRAVGELAKAIGTEGLVAGQ 225          
BLAST of FC932481 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 45/155 (29.03%), Postives = 70/155 (45.16%), Query Frame = 1
Query:  229 KSYWTSVHEDIGAHLRQAXXXXXXXXXXXXMRHFVFAAPVNMAPALCVAACELVGGHREXXXXXXXXXXXXXXXSFIHENLPLSDRTSLIPKSKPTMYHAFKPNTGLLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 693
            K Y  S  E I   L +A            MR+ + A    + P LC+AACELVGG                  S I ++LP  D   L  + KPT +  F  +  +L   A+L    E L  +D     +S +++R + E+ +++G++G+V GQ
Sbjct:   82 KPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTMSLIKDDLPCMDNDDL-RRGKPTTHKVFGESVAILSGGALLALAFEHLTEAD----VSSKKMVRAVKELAKSIGTKGLVAGQ 231          
The following BLAST results are available for this feature:
BLAST of FC932481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GGPPS_CATRO1.463e-1427.49Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR5.559e-1432.90Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH5.559e-1434.40Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGR_ARATH1.238e-1327.51Geranylgeranyl pyrophosphate synthase-related prot... [more]
GGPPS_CAPAN1.617e-1327.41Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_SINAL3.603e-1333.60Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH5.753e-1129.03Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34209A11EF PostHarveN Citrus clementina cDNA clone C34209A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932481 ID=FC932481; Name=FC932481; organism=Citrus clementina; type=EST; length=762bp
GACTCATAATTTTTCTCCACCCAATCCTTTCTCTCCTTCACTCACCTTTC
TTCGTATATAGTTAATTTCTTCCTTTCTATTTGTCTTTTGAAGTCTGCAC
CAATGGCTAAAGCCCTCTCTGTTTTAAACCTACCGGCTCATGTTGCCCCT
AGGCGAAATCACAGCCGTCCATCATTGTCCTACAGACCTATGATGGTCAC
CATGGCCATGTCCACACCCAACAAGAATAAATCATATTGGACGTCTGTAC
ATGAGGATATTGGGGCCCACCTCCGGCAGGCCGTCGTCGTAAAGGAGCCG
GTAGAAGTTTACGAGCCCATGCGCCATTTTGTCTTCGCCGCCCCAGTCAA
CATGGCGCCCGCGCTGTGTGTGGCAGCCTGTGAGCTCGTCGGGGGCCACC
GCGAATAAGCCATTGTTGCTGCTGCTGCTTTGCACGTCATGCATGCAGCT
TCTTTCATTCATGAAAATCTTCCACTATCAGATAGGACTAGTCTTATCCC
CAAATCCAAGCCCACGATGTATCACGCTTTCAAACCAAATACGGGGCTTC
TCGTGGCTGATGCAATGCTTCCGTTTGGGCTGGAGTTGTTGGCCAGCTCC
GACAACCCGGCCGGAAACAACTCGGGTCGGATTTTACGTGTGATGGTTGA
GATGACACGCGCCATGGGATCACAAGGTGTTGTGGAGGGGCAGTACATGA
GCTACATGTAGTCATGTGATGATGATGATCGAAATTGATGGTATACAGAG
TGGAATGACTAT
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