FC932492

Overview
NameFC932492
Unique NameFC932492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13586 contig Ccv1_Contig13586:63..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932492 vs. ExPASy Swiss-Prot
Match: EIF3D_ARATH (Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.495e-55
Identity = 120/244 (49.18%), Postives = 144/244 (59.02%), Query Frame = 2 
Query:   26 MVSGEFEIGAVPFNPDGWGPPESTATTTAALPL---------HVPFAPFSRSEKLGRIADWTRNAYNNPSNRQNASKNPXXXXXXXXXXXXXXXXX-------NPDDDSSFRLVDXXXXXXXXXXXXXXXNQHH-RPQLPQXXXXXXXXXXXXXXXXXXXXXXHYNLNRSNVNQTRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVSEPEDLLLCGSLEYYDRSYDRVTPKDERRLERFK 706
            MV+  FE  AVPFN DGWGPP+++  +++A P          +VPFA FSRS+KLGR+ADWTRN  +NPS R N                             NPD+D++FRLVD               N HH R QLPQ                       YN NR+N++  RREAA FKSSVDIQPEWNML+QIPFSTFSKLS++V EPEDLLLCG LEYY+R +DR+TPK+ERRLERFK
Sbjct:    1 MVTEAFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRNL-SNPSARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFGPKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAAAFKSSVDIQPEWNMLEQIPFSTFSKLSYTVQEPEDLLLCGGLEYYNRLFDRITPKNERRLERFK 243
The following BLAST results are available for this feature:
BLAST of FC932492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D_ARATH1.495e-5549.18Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC34209B10EF PostHarveN Citrus clementina cDNA clone C34209B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932492 ID=FC932492; Name=FC932492; organism=Citrus clementina; type=EST; length=708bp
GCTTTTTCACTTCATCCTAATCACAATGGTGAGCGGCGAATTTGAGATCG
GAGCCGTTCCATTCAATCCTGACGGCTGGGGCCCACCGGAATCAACGGCA
ACCACAACCGCTGCCCTCCCTCTCCACGTGCCGTTTGCCCCCTTCTCCCG
ATCCGAAAAACTTGGTCGGATCGCGGACTGGACCCGCAACGCATACAACA
ATCCATCAAACCGCCAAAACGCTAGCAAAAATCCGGCCGACACCGCTTTC
GACTTCTCCGCCGACGATTCCTTTCCTCTGTCTGCCAATCCCGACGACGA
CTCCTCCTTCCGTCTCGTGGACGGCAAGCCTCCACCGCGTCCGAAGTTTG
GCCCTAAGTGGCGGTTTAATCAGCACCACCGTCCTCAGTTGCCCCAGCGC
CGCGACGAGGAGGTGGAGGCCCGTAAGCGCGAGGCTGAAAAAGAGCGGGC
CCGACGTGACCGCCACTACAACCTCAACCGTTCTAACGTCAACCAGACCC
GACGTGAAGCTGCAGTTTTCAAATCCTCTGTCGACATTCAGCCCGAATGG
AACATGCTTGATCAAATTCCCTTCTCAACTTTTTCAAAACTTTCCTTCTC
TGTTTCGGAGCCTGAAGACTTGTTATTGTGTGGGTCCCTTGAGTACTACG
ACAGGTCGTACGATCGTGTCACGCCGAAAGATGAACGTAGGCTCGAGAGG
TTTAAGTA
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