FC932505
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.478e-16 Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2 Query: 458 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 G VVS+KM K+VVVAVD L H +Y R V+RT KFMAHDE+NQC IGD+V Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKV 60 HSP 2 Score: 33.113 bits (74), Expect = 4.478e-16 Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696 V++ +RPLS+HK W VAE+L++ Sbjct: 60 VKIAETRPLSRHKRWRVAEVLER 82
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNS3 (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9311) GN=rpsQ PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.664e-15 Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2 Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 +K VG VVS+KM K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRV Sbjct: 3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDEDNACRVGDRV 57 HSP 2 Score: 35.4242 bits (80), Expect = 1.664e-15 Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696 VR+ +RPLS+HK WA+AE+L + Sbjct: 57 VRITETRPLSRHKRWAIAEVLSQ 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THETN (30S ribosomal protein S17 OS=Thermoanaerobacter tengcongensis GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.812e-15 Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616 Q K +G VVSNKMQK++VVAV+ F H +Y + VKRT K+ HDENN CN+GD V + Sbjct: 5 QRKVRIGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIM 63 HSP 2 Score: 30.0314 bits (66), Expect = 2.812e-15 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696 V++ +RPLSK K W + E++KK Sbjct: 60 VKIMETRPLSKEKRWRLVEVIKK 82
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNPX (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH8102) GN=rpsQ PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.812e-15 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 2 Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 +K VG VVS+KM+K+VVVAV+ F H +Y + V RT+++ AHDE+N C +GDRV Sbjct: 3 VKERVGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNSCRVGDRV 57 HSP 2 Score: 34.2686 bits (77), Expect = 2.812e-15 Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEIL 690 VR+ +RP+S+HK WA+AE+L Sbjct: 57 VRITETRPMSRHKRWAIAEVL 77
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNPW (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH7803) GN=rpsQ PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.752e-15 Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 2 Query: 443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 +K VG VVS+KM K+VVVAV+ F H +Y + V RT+++ AHDENN +GDRV Sbjct: 3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDENNSVRVGDRV 57 HSP 2 Score: 35.4242 bits (80), Expect = 4.752e-15 Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEIL 690 VR+ +RPLS+HK WAVAE+L Sbjct: 57 VRITETRPLSRHKRWAVAEVL 77
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PELCD (30S ribosomal protein S17 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 6.177e-15 Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2 Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616 K+ VG+V+S+KM K+VVV VD++ H +Y +Y+KR F AHDE N+CN+GD+VS + Sbjct: 9 KTRVGVVISDKMDKTVVVKVDQMVKHPIYKKYIKRRVTFKAHDEENRCNVGDKVSVV 65 HSP 2 Score: 29.261 bits (64), Expect = 6.177e-15 Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 1 Query: 643 SRPLSKHKHWAVAEILKKHV 702 +RPLS+ K W V EIL+K+V Sbjct: 67 TRPLSRDKRWRVREILEKNV 86
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_DESOH (30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpsQ PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 8.030e-15 Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 2 Query: 458 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 G VVS+KM K+V+VAV+RL H+ Y +YV+RT+KF AHDE NQC +GD+V Sbjct: 12 GTVVSDKMDKTVIVAVERLVKHQEYKKYVRRTAKFAAHDEQNQCAVGDKV 61 HSP 2 Score: 29.261 bits (64), Expect = 8.030e-15 Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKKHV 702 V + SRPLS+ KHW V +++K V Sbjct: 61 VIITESRPLSRTKHWRVVNVVEKAV 85
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PELTS (30S ribosomal protein S17 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsQ PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-14 Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2 Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616 K++ G VVSNKM K+VVVAV+ L H +Y R ++RT KF AHDE N C IGD+V + Sbjct: 8 KTLTGRVVSNKMDKTVVVAVETLVRHPLYQRTIRRTKKFKAHDEENACRIGDKVKMM 64 HSP 2 Score: 29.6462 bits (65), Expect = 1.044e-14 Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696 V++ +RPLSK K W V EIL++ Sbjct: 61 VKMMETRPLSKEKRWRVVEILER 83
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THESQ (30S ribosomal protein S17 OS=Thermotoga sp. (strain RQ2) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-14 Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2 Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 K + G+VVS+KM K+VVVAV++L H +Y +YVKRT K+ AHDE N+C IGD V Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHTIYKKYVKRTKKYHAHDERNECKIGDVV 57 HSP 2 Score: 27.335 bits (59), Expect = 1.357e-14 Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696 V ++ +RPLSK K W V I+++ Sbjct: 57 VEIEETRPLSKTKRWRVVRIIQR 79
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THEP1 (30S ribosomal protein S17 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-14 Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2 Query: 446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607 K + G+VVS+KM K+VVVAV++L H +Y +YVKRT K+ AHDE N+C IGD V Sbjct: 4 KRLTGIVVSDKMDKTVVVAVEKLVQHPIYKKYVKRTKKYHAHDERNECKIGDVV 57 HSP 2 Score: 27.335 bits (59), Expect = 1.357e-14 Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 628 VRLDPSRPLSKHKHWAVAEILKK 696 V ++ +RPLSK K W V I+++ Sbjct: 57 VEIEETRPLSKTKRWRVVRIIQR 79 The following BLAST results are available for this feature:
BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 249
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bpback to top |