FC932507

Overview
NameFC932507
Unique NameFC932507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15524 contig Ccv1_Contig15524:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932507 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 76/148 (51.35%), Postives = 107/148 (72.30%), Query Frame = 2
Query:  269 YDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNLE--EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSR--TANWRDTL 700
            YD+  E++AFDDTKAGVKGLVD+GI  +P+IF+ PP++  ++  +H   F  PVIDL G+  + ++  EIVD+VR A+E WGFFQVVNHGIP +VL+  ++G  +F E D E+KK++YTRD  + V + SN DL+ S    A+WRDT+
Sbjct:   10 YDKMSELKAFDDTKAGVKGLVDSGITKVPQIFVLPPKDRAKKCETH---FVFPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTI 154          
BLAST of FC932507 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.560e-36
Identity = 75/149 (50.34%), Postives = 102/149 (68.46%), Query Frame = 2
Query:  260 VTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNL--EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTL 700
            V   DR+  ++AFD+TK GVKGL+DAGI  IP IF  PP  L        ++F +P IDL G   +++    +V+++  AAE WGFFQV+NHGIP++VLE+MI+GI +F+E D E+KK FY+RD    + ++SNFDL  S  ANWRDTL
Sbjct:    8 VAALDRSTLLKAFDETKTGVKGLIDAGITEIPSIFRAPPATLTSPKPPSSSDFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMVYSSNFDLFSSPAANWRDTL 156          
BLAST of FC932507 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 71/148 (47.97%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  266 DYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNNL--EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLT 703
            +YDRA E++AFD+ K GVKGLVDAG+  +PRIF  P   +     +  T   +P IDL GV  + +  E +V +V+ A E +GFFQ +NHG+PL+V+E+MI GI +F++ D E++K FYTRD+T+ ++++SN DL+ S  A+WRDTL+
Sbjct:    4 NYDRASELKAFDEMKIGVKGLVDAGVTKVPRIFHNPHVNVANPKPT-STVVMIPTIDLGGVFESTVVRESVVAKVKDAMEKFGFFQAINHGVPLDVMEKMINGIRRFHDQDPEVRKMFYTRDKTKKLKYHSNADLYESPAASWRDTLS 150          
BLAST of FC932507 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 65/152 (42.76%), Postives = 111/152 (73.03%), Query Frame = 2
Query:  257 TVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVE-ELTSHQTNFQVPVIDLDGVRGNN--LEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQ-TRNVRFNSNFDLHYSRTANWRDTL 700
            T+++ +  +E++AFD+TKAGVKG+VD GI  IPRIFI  P+ L    +   +++ ++PVI+L+G+  N+    EIV+++  A+E +GFFQ+VNHGIP +V+++M++G+ KF+E D ++K+++Y+RD+  +N  ++SN+ L      NWRDT+
Sbjct:   35 TLSEEESLRELKAFDETKAGVKGIVDTGITKIPRIFIDQPKNLDRISVCRGKSDIKIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSRDRFNKNFLYSSNYVLIPGIACNWRDTM 186          
BLAST of FC932507 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.511e-31
Identity = 71/157 (45.22%), Postives = 102/157 (64.97%), Query Frame = 2
Query:  269 YDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRP------PEELVEELTSHQTNFQVPVIDL------DGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLT 703
            +DRA E++AFD+TK GVKGLVD+G+  +PRIF  P      P+ L  +L   +T   +P IDL      D ++ NN    +++++ AA  WGFFQV+NHG+ L +LE+M +G+  F+E   E++KEFY+RD +R   + SNFDL  S  ANWRDT +
Sbjct:   10 FDRASELKAFDETKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHLKT---IPTIDLGGRDFQDAIKRNNA---IEEIKEAAAKWGFFQVINHGVSLELLEKMKKGVRDFHEQSQEVRKEFYSRDFSRRFLYLSNFDLFSSPAANWRDTFS 160          
BLAST of FC932507 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.116e-29
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 2
Query:  248 TTQTVTDYDRAKEVQAFDDTKAGVKGLVDAGIVNIPRIF------IRPPEELVEELTSHQTNFQVPVIDLDGVRGNNL---EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDT 697
            +T+    +DRA E++AFD+TK GVKGLVD+GI  IPRIF      +  P+ L  +L   +T   +P IDL G    +    +  ++ ++ AA  WGFFQV+NHG+ L +LE+M +G+  F+E   E++K+ Y+RD  R   + SNFDL+ +  ANWRDT
Sbjct:    3 STKIAPSFDRASELKAFDETKTGVKGLVDSGISKIPRIFHHSSVELANPKPLPSDLLHLKT---IPTIDLGGRDFQDAIKHKNAIEGIKEAAAKWGFFQVINHGVSLELLEKMKDGVRDFHEQPPEVRKDLYSRDFGRKFIYLSNFDLYTAAAANWRDT 158          
The following BLAST results are available for this feature:
BLAST of FC932507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ACCH3_SOLLC1.195e-3651.351-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH1_ARATH1.560e-3650.341-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH1.907e-3447.97Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
DV4H_CATRO1.157e-3142.76Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH3_ARATH1.511e-3145.221-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCH2_ARATH4.116e-2942.771-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34209D02EF PostHarveN Citrus clementina cDNA clone C34209D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932507 ID=FC932507; Name=FC932507; organism=Citrus clementina; type=EST; length=713bp
GATCTCTGCTGTAAGCATAGCATCCTTGAATCGTTGACTGCCAGTGCAAT
GGTGTGATCTCTATCAAGCAATAAGTAAGCTTGATTTTAAGCCAGGCCGT
TTACCAATTATAACTATCCAATGTTTATGCTCATTAATTATTTGATACTT
GGTTGAAAAGTATTAACATAGGCCATAAGACTACCATCTATGTTCATCAT
TTTCTTGTAGAAAACAGACGATGGATATCTCAGATGCCAGTAGAACGACC
ACGCAAACTGTAACGGACTACGACAGAGCTAAAGAGGTTCAGGCTTTTGA
TGATACAAAAGCCGGTGTCAAAGGATTAGTGGATGCTGGAATTGTGAACA
TTCCGAGGATATTCATTCGACCACCTGAGGAGCTTGTCGAGGAGTTGACC
AGTCATCAGACCAATTTTCAAGTACCGGTTATCGATCTTGATGGCGTCAG
AGGCAATAACCTTGAGGAGATTGTTGATCAAGTTCGGGCTGCAGCAGAGA
CATGGGGCTTCTTTCAAGTGGTGAATCACGGTATTCCCTTAAATGTGTTG
GAAGAGATGATTGAAGGGATAAGCAAGTTTAATGAACTAGATGTTGAGTT
GAAGAAAGAGTTTTATACACGTGACCAGACAAGAAATGTCAGATTCAACA
GCAACTTTGATCTGCATTACTCACGAACAGCTAATTGGCGGGACACGTTG
ACAATTTCTACCT
back to top