FC932523

Overview
NameFC932523
Unique NameFC932523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4950 contig Ccv1_Contig4950:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 96/154 (62.34%), Postives = 122/154 (79.22%), Query Frame = 3
Query:  102 MSTVTLSAPCMVKAAPRNQLSRNLIKSPT---SLGSVTGISKTFGLKCSPNFQASM--AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            M+TV +S+  M KA  R+Q +  LI + +   S+GS   +S++FGLKCS N   +   AVYK+KL+GP G+E EFE Q+DQYILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDGSFL+D+ +E GY+LTC++YP SDCVI +HKE EL
Sbjct:    1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.569e-47
Identity = 94/151 (62.25%), Postives = 113/151 (74.83%), Query Frame = 3
Query:  102 MSTVTLSAPCMVKAAPRN-QLSRNLIKSPTSLGSVTGISKTFGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MST T +  C +    R  Q S+  +KSP+SL   + ++K   LK S     S MAVYK+KL+GP+GEEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:    1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.739e-39
Identity = 72/96 (75.00%), Postives = 87/96 (90.62%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            AVYK+KLIGP+GEE+EFE Q+DQ+ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++YP SDCVI +HKE EL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.319e-38
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 3
Query:  261 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            AVYK+KLIGP G+E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++YP SD VI +HKEEEL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.151e-37
Identity = 74/120 (61.67%), Postives = 93/120 (77.50%), Query Frame = 3
Query:  195 GSVTGISKTFGLKCSPNFQASMA--VYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            G     ++  G + S  F AS A  ++K+KL+GP G EHEFEA +D YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCISYP +DCVI +HKEE+L
Sbjct:   35 GHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.742e-37
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA YK+ LI   +G     E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 82/154 (53.25%), Postives = 107/154 (69.48%), Query Frame = 3
Query:  102 MSTVTLSAPCMVKAAPRNQLSRNLIKSPTSLGSV--TGISKTFGLKCSP---NFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            M++  LS+  +  +  R Q      ++P SL S+        FGLK S        +MA YK+K I P+GE+ E E +ED Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD QM  GY+LTC++YPTSD VI++HKEE +
Sbjct:    1 MASTALSSAIVSTSFLRRQ------QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA Y +KLI P GE +  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 3
Query:  258 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA Y +KLI P GE    E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGES-SIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of FC932523 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.837e-35
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  258 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 548
            MA +K+ LI   +G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of FC932523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH1.311e-4962.34Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE3.569e-4762.25Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA2.739e-3975.00Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA2.319e-3875.00Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE1.151e-3761.67Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_MASLA9.742e-3773.47Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_ARATH1.662e-3653.25Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_SYNY44.835e-3672.16Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY36.315e-3672.16Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_NOSMU1.837e-3571.43Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34209E06EF PostHarveN Citrus clementina cDNA clone C34209E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932523 ID=FC932523; Name=FC932523; organism=Citrus clementina; type=EST; length=739bp
GCAACAACACAACGCCAATTCATTTCACTTGACCGCCACCCACCAACCCA
CTCGCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTGGGTAAA
GATGTCGACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCA
GAAATCAACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCT
GTTACGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCA
AGCATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAG
AGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAG
GAAGCAGGAGTCGACCTGCCCTATTCCTGCCGCGCTGGTGCTTGCTCGAC
GTGTGCTGGGAAGTTGGTGTCTGGTTCAGTTGACCAGTCAGATGGTTCCT
TCCTCGATGACAATCAAATGGAGGCTGGTTATCTGCTGACTTGCATTTCA
TACCCGACTTCAGATTGCGTGATTCAGTCTCACAAGGAAGAAGAGCTTTG
CTGAGTGCCTTTGCTGTCAGTTGGTTTAGGGTTTTTCAAGTATGAACTGT
GATCAAGTGCCTGAGTATGNCTGATAGGTTTCTCATGGGCCTACAATATT
TTTTAGATTTCAGCGTGTTGTCTGGTGCAATGGAATCTGTAATTTTTCAT
TTAGTTATACTATTACTGGCATTTTGGGATTTCATTTCA
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