FC932529

Overview
NameFC932529
Unique NameFC932529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4047 contig Ccv1_Contig4047:5..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VP282_ARATH (Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64
Identity = 126/177 (71.19%), Postives = 139/177 (78.53%), Query Frame = 2
Query:  191 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTK*RTGFQXV-KMGA 718
            MEVKLWNDKREREMYENFAEL+AIIKATEKLEKAY+RD+I+ SEYE+ECQKLI HFKTLS+TLKD VP+IERFADTYKMDCPAAL RLVTSG+PATVEHR               ECVQNFIT+MDSLKLNMVAVDQV+P            +ILPPDFEGKTK +     + KMGA
Sbjct:    2 MEVKLWNDKREREMYENFAELFAIIKATEKLEKAYIRDLINPSEYESECQKLIVHFKTLSATLKDTVPNIERFADTYKMDCPAALYRLVTSGLPATVEHRATVAASTSNSASIVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKTKMKEWLSRLSKMGA 178          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VP281_ARATH (Vacuolar protein sorting-associated protein 28 homolog 1 OS=Arabidopsis thaliana GN=VPS28-1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 125/177 (70.62%), Postives = 138/177 (77.97%), Query Frame = 2
Query:  191 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTK*RTG-FQXVKMGA 718
            MEVKLWNDKREREMYENFAELYAIIKATEKLEKAY+RD+IS SEYETECQKLI HFKTLS++LKD+VP+IERFA+TYKMDC AA+ RLVTSGVPATVEHR               ECVQNFIT+MDSLKLNMVAVDQV+P            +ILPPDFEGK K +    +  KMGA
Sbjct:    1 MEVKLWNDKREREMYENFAELYAIIKATEKLEKAYIRDLISPSEYETECQKLIVHFKTLSASLKDMVPNIERFAETYKMDCSAAVYRLVTSGVPATVEHRAAASASTSSSASVVAECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKLSILPPDFEGKIKMKEWLLRLSKMGA 177          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_DICDI (Vacuolar protein sorting-associated protein 28 OS=Dictyostelium discoideum GN=vps28 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 76/163 (46.63%), Postives = 98/163 (60.12%), Query Frame = 2
Query:  194 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTK 682
            EVKL+N+  EREMYEN AELY+IIK TE LEKAY+RD +S  +Y T C KLIA FK+  + LKD V ++ +F   Y ++C AA +RLV  G P+T+EH                E VQ FIT MDS++L +V+VD ++P              L P FEGK K
Sbjct:   84 EVKLFNNNIEREMYENLAELYSIIKVTEHLEKAYIRDDVSPKDYTTACSKLIAQFKSSQTLLKDQVSNVGQFMKDYDLNCKAAFDRLVIKGFPSTLEHNTNESSTDSAMAKNVAEAVQLFITTMDSIRLKLVSVDGIYPLLSDLMESLNKNQWLGPTFEGKEK 246          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_HUMAN (Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.903e-22
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  194 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGK 676
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D +S SEY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+
Sbjct:   23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIK------DDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGR 177          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_DROME (Vacuolar protein sorting-associated protein 28 homolog OS=Drosophila melanogaster GN=Vps28 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 59/164 (35.98%), Postives = 85/164 (51.83%), Query Frame = 2
Query:  194 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTK 682
            EVKL+ + RERE Y+N A+LYAII   ++LEKAY+RD I+  EY   C K +  +K     ++ D  PS+E F   +++DCPAAL R +    P T+                  E V  FIT MD L+L +  +D + P            +++P DF+ K K
Sbjct:   11 EVKLFRNAREREKYDNMADLYAIINTIQQLEKAYIRDCITPQEYTAACSKYLVQYKVAFKQVQCDEFPSVETFVKKFRLDCPAALER-IREDRPITIR------DDKGNTSKCIAEIVSLFITIMDKLRLQINTMDALQPDVKDLADNMNRLSLIPEDFDAKLK 167          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_RAT (Vacuolar protein sorting-associated protein 28 homolog OS=Rattus norvegicus GN=Vps28 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  194 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGK 676
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+
Sbjct:   30 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIK------DDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGR 184          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_MOUSE (Vacuolar protein sorting-associated protein 28 homolog OS=Mus musculus GN=Vps28 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  194 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGK 676
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+
Sbjct:   23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIK------DDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGR 177          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_BOVIN (Vacuolar protein sorting-associated protein 28 homolog OS=Bos taurus GN=VPS28 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  194 EVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLK-DIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGK 676
            EVKL+ + RERE Y+N AEL+A++K  + LEKAY++D ++ +EY   C +L+  +K     ++   + SI+ F   +++DCP A+ R +    P T++                 + V  FIT MD L+L + A+D++ P            + LPPDFEG+
Sbjct:   23 EVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVTPNEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMER-IKEDRPITIK------DDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGR 177          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_CAEEL (Vacuolar protein sorting-associated protein 28 homolog OS=Caenorhabditis elegans GN=Y87G2A.10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 56/143 (39.16%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  182 NTPMEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKTLSSTLKDIVPSIERFADTYKMDCPAALNRLVTSGVPATVEHRXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHP 610
            N   EV+L+ +  ERE  EN +EL+A++ A E LEK + RD +S+ EY++EC KLI  +K ++  L     SIE FA  Y++ CPAA+ R +  G P TV+                   V+ FIT +D+L+LN  AVD ++P
Sbjct:    7 NLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFKLIDQYK-VTMRLVHGATSIEDFAKKYRLHCPAAIER-IREGRPITVK------DDQGNVLKHIASIVEQFITFLDALRLNTRAVDDLYP 141          
BLAST of FC932529 vs. ExPASy Swiss-Prot
Match: VPS28_YEAST (Vacuolar protein sorting-associated protein 28 OS=Saccharomyces cerevisiae GN=VPS28 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 60/192 (31.25%), Postives = 88/192 (45.83%), Query Frame = 2
Query:  161 INRLIHLNTPMEVKLWNDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYETECQKLIAHFKT-LSSTLKDIV----PSIERFADTYKMDCPAALNRLVTSGVPATVEH-------------RXXXXXXXXXXXXXXXECVQNFITAMDSLKLNMVAVDQVHPXXXXXXXXXXXXTILPPDFEGKTK 682
            I++L H   P+       K ++E+ E  +E+Y+I+   + +EKAY++D I  ++Y     KL+  FK  L+S  K+ +     SIE F DTY +    A+ RL   G+P T EH             +               E   NFIT MD+LKLN  A DQ+HP            T    DFE ++K
Sbjct:   14 ISQLFHDEVPLFDNSITSK-DKEVIETLSEIYSIVITLDHVEKAYLKDSIDDTQYTNTVDKLLKQFKVYLNSQNKEEINKHFQSIEAFCDTYNITASNAITRL-ERGIPITAEHAISTTTSAPSGDNKQSSSSDKKFNAKYVAEATGNFITVMDALKLNYNAKDQLHPLLAELLISINRVT--RDDFENRSK 201          
The following BLAST results are available for this feature:
BLAST of FC932529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VP282_ARATH4.004e-6471.19Vacuolar protein sorting-associated protein 28 hom... [more]
VP281_ARATH7.552e-6370.62Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_DICDI4.318e-3446.63Vacuolar protein sorting-associated protein 28 OS=... [more]
VPS28_HUMAN2.903e-2234.57Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_DROME3.792e-2235.98Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_RAT1.441e-2133.33Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_MOUSE1.441e-2133.33Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_BOVIN1.441e-2133.33Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_CAEEL6.693e-1939.16Vacuolar protein sorting-associated protein 28 hom... [more]
VPS28_YEAST1.306e-1431.25Vacuolar protein sorting-associated protein 28 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34209E12EF PostHarveN Citrus clementina cDNA clone C34209E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932529 ID=FC932529; Name=FC932529; organism=Citrus clementina; type=EST; length=719bp
GGAAAGGTTCACGACAATCAAAGCCGCGTTTCAACTACTCTCAAGATTAG
TTCTCTTTGCGCGTGTCCCGTTCTCTTCCCCAATCCTCCACTATTGCTTA
AAAAAGGAAAAAAAATTAAAAAAACCAAAATTTATCCAACCCCTCAAACA
GTATATACTTATAAATAGATTAATACATCTAAATACCCCAATGGAGGTCA
AGCTATGGAACGACAAGCGCGAGAGAGAAATGTATGAAAACTTTGCTGAG
CTTTATGCTATAATAAAAGCCACAGAAAAGCTTGAAAAAGCATATGTTCG
TGATATTATTAGTTCCTCTGAGTATGAAACAGAATGTCAAAAGCTCATTG
CCCATTTTAAAACCTTATCTTCGACCTTGAAAGATATTGTTCCGAGCATT
GAACGGTTTGCTGATACATATAAAATGGACTGTCCGGCTGCTCTGAATCG
CTTGGTCACCTCTGGGGTGCCTGCTACGGTGGAGCATAGAGCGGCTGCAG
TTGCCTCAACCACCACCTCTGCTGCCATTGTGGCAGAGTGTGTCCAGAAC
TTTATTACTGCCATGGACTCTTTAAAATTGAATATGGTGGCAGTTGATCA
GGTGCATCCTCTGTTATCAGATTTGCTGGGTTCACTCAATAAGCTGACTA
TTCTGCCACCGGATTTTGAGGGGAAAACAAAATGAAGGACTGGATTTCAG
GNTGTCAAGATGGGTGCTG
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