FC932531

Overview
NameFC932531
Unique NameFC932531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15197 contig Ccv1_Contig15197:91..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_PHOLL (Probable phosphoglycerate mutase gpmB OS=Photorhabdus luminescens subsp. laumondii GN=gpmB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.295e-17
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE+ WN   ++QGQ D  L E G  QA  VA+R+  E  I+ I +SDL R   TA+ IA  C G ++I +P LRE H+G L+               +  L G     IP  GES+D+L  R  +AL+      +G R ++V+HG
Sbjct:    3 QVYLVRHGESEWNAARRIQGQSDSPLTETGEHQARLVAQRVKSE-SITHIITSDLGRTRRTAEIIAKVC-GCEIILEPRLRELHMGVLERRNIDSLTSEEEKWRKKVLDGTPGGRIP-KGESMDELAVRMRAALENCRNLPVGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SERP5 (Probable phosphoglycerate mutase gpmB OS=Serratia proteamaculans (strain 568) GN=gpmB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN   ++QGQ D  L   G  QA  VA+R++K+  I+ + +SDL R   TAQ IA  C G +VI DP LRE H+G L+  +            +  + G  D  IP  GES+ +L  R   AL+       G + ++V+HG
Sbjct:    3 QVYLVRHGETEWNAARRIQGQSDSPLTANGEHQARLVAQRVSKQ-GITHVITSDLGRTRRTAQIIAEAC-GCEVINDPRLRELHMGVLEERLIDSLTPQEEQWRKQMVDGTADGRIP-QGESMSELGDRMREALESCLMLPEGSKPLIVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_ESCF3 (Probable phosphoglycerate mutase gpmB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gpmB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 58/152 (38.16%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  ++ DP LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  SAL        G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDILLDPRLRELNMGVLETRNIDSLTEEEENWRRQLVNGTKDGRIP-QGESMLELSERMHSALASCLELPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_YERE8 (Probable phosphoglycerate mutase gpmB OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN   ++QGQ D  L  VG  QA  VA+R+  +  I+ I +SDL R  +TA+ IA+ C GLKV+ DP LRE ++G L+               +  ++G     IP  GES+ +L RR  +AL        G + ++V+HG
Sbjct:    3 QVFLVRHGETVWNASRQIQGQSDSPLTAVGERQAHLVAQRVRSQ-GITHIITSDLGRTQQTAKIIADAC-GLKVVTDPRLRELNMGVLETRPIESLTPEEEQWRKQMINGTEGGRIP-EGESMAELGRRMRAALDSCLELPAGSKPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SHISS (Probable phosphoglycerate mutase gpmB OS=Shigella sonnei (strain Ss046) GN=gpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SHIFL (Probable phosphoglycerate mutase gpmB OS=Shigella flexneri GN=gpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SHIF8 (Probable phosphoglycerate mutase gpmB OS=Shigella flexneri serotype 5b (strain 8401) GN=gpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SHIBS (Probable phosphoglycerate mutase gpmB OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_SHIB3 (Probable phosphoglycerate mutase gpmB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLEKRHIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
BLAST of FC932531 vs. ExPASy Swiss-Prot
Match: GPMB_ECOUT (Probable phosphoglycerate mutase gpmB OS=Escherichia coli (strain UTI89 / UPEC) GN=gpmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.432e-16
Identity = 57/152 (37.50%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  155 EIIVVRHGEAPWNVQGKVQGQLDVELNEVGREQAVSVAERLAKEFKISVIYSSDLKRALETAQTIANRCGGLKVIEDPELRERHLGDLQGLVFREAAKVCPIAYQAFLSGKTDQDIPGGGESLDQLYRRCTSALQRIARKHIGERIVVVTHG 610
            ++ +VRHGE  WN + ++QGQ D  L   G +QA+ VA R AKE  I+ I SSDL R   TA+ IA  C G  +I D  LRE ++G L+        +      +  ++G  D  IP  GES+ +L  R  +AL+       G R ++V+HG
Sbjct:    3 QVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATR-AKELGITHIISSDLGRTRRTAEIIAQAC-GCDIIFDSRLRELNMGVLETRNIDSLTEEEENWRRQLVNGTVDGRIP-EGESMQELSDRVNAALESCRDLPQGSRPLLVSHG 151          
The following BLAST results are available for this feature:
BLAST of FC932531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GPMB_PHOLL5.295e-1737.50Probable phosphoglycerate mutase gpmB OS=Photorhab... [more]
GPMB_SERP51.180e-1636.84Probable phosphoglycerate mutase gpmB OS=Serratia ... [more]
GPMB_ESCF31.541e-1638.16Probable phosphoglycerate mutase gpmB OS=Escherich... [more]
GPMB_YERE82.012e-1636.84Probable phosphoglycerate mutase gpmB OS=Yersinia ... [more]
GPMB_SHISS3.432e-1637.50Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIFL3.432e-1637.50Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIF83.432e-1637.50Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIBS3.432e-1637.50Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_SHIB33.432e-1637.50Probable phosphoglycerate mutase gpmB OS=Shigella ... [more]
GPMB_ECOUT3.432e-1637.50Probable phosphoglycerate mutase gpmB OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC34209F02EF PostHarveN Citrus clementina cDNA clone C34209F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932531 ID=FC932531; Name=FC932531; organism=Citrus clementina; type=EST; length=758bp
GAATAATATTCTTGCATGCGTAAAAATCCCAAAACATTTCTGCGCGGAAT
CGGAACGGATTCAGAGGCACTCAAAACCCGGGAACATGGCCGAGTCAACG
GAGTCTCCAGCAGTCATGAACGGCAGCTCTGCCTCTGTTGGGCCTGATTA
TTGTGAGATCATTGTGGTGCGTCACGGTGAAGCGCCTTGGAACGTTCAAG
GAAAAGTTCAGGGGCAGTTAGATGTTGAATTGAATGAAGTTGGAAGAGAG
CAAGCTGTTTCTGTGGCTGAGCGGCTGGCTAAGGAATTTAAAATTTCTGT
TATCTATTCTTCTGACCTGAAGCGAGCACTCGAAACTGCACAGACAATTG
CAAACAGATGTGGTGGGCTAAAGGTCATTGAAGATCCTGAACTAAGGGAA
AGACATCTTGGAGATCTTCAAGGCCTTGTTTTCCGTGAAGCAGCCAAAGT
CTGTCCTATAGCATATCAAGCATTTTTATCTGGCAAGACAGATCAAGATA
TCCCTGGTGGTGGAGAAAGTCTTGATCAACTTTATCGACGGTGCACGTCT
GCATTGCAGAGAATTGCTAGGAAGCATATAGGAGAGCGAATAGTAGTTGT
GACTCATGGTGGTGTAATCAGAACACTCTACCACGGGCTTGCCCAAACAA
AAGCCTGAAAGGTAGGTCCTGAATCATCTATCACATATTTAGGTGACTGA
AAAAACAGCGGGTCTTAAAACCTGGGGTGATGTAGTCATCTCACAAACAG
ATTCTAAG
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