FC932535

Overview
NameFC932535
Unique NameFC932535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15435 contig Ccv1_Contig15435:57..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932535 vs. ExPASy Swiss-Prot
Match: 3HBH1_PSEAC (3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 57/183 (31.15%), Postives = 88/183 (48.09%), Query Frame = 2 
Query:   89 DIVIVGAGIAGLTTSLGLYRLGIRSMVLESSESLRVTGFAFTVWTNAWKALDAVGIGNSLRQQHQQLRSI-----VATPTISGKPSSERSLKVQGKYGEHEMRCVRRKLLLETLAKELPSGTIRYSSQVVSIEESGHFKLLHLADGTILKTKVLIGCDGV-NSIVAKWLGFKNPAFVGRSAIR 619
            +I+I GAGI GL+ +LGL R G+RS+VLE +  L   G    +  NA+ ALDA+GIG   RQ    +  +     +    I+  P + R  +  G       R     LL+E   K      +R +++VV  E         L DG+ +   VL+G DG+ +++  K +G  +P   G +  R
Sbjct:    4 NILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIGEVARQTGVHVDKLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEACHK-TGLVEVRTNAEVVDYENFPDRVEAILHDGSCINGAVLVGADGLWSNVRQKVIGDGDPRVSGHTTYR 185
The following BLAST results are available for this feature:
BLAST of FC932535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
3HBH1_PSEAC6.036e-1131.153-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas a... [more]
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Properties
Property NameValue
Genbank descriptionC34209F06EF PostHarveN Citrus clementina cDNA clone C34209F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932535 ID=FC932535; Name=FC932535; organism=Citrus clementina; type=EST; length=678bp
TCAATTCCAGAGCCGATCACTTTACGCTCTAGCTAGAACTTGAACTCACA
GAAAATAGAAAGCCCAAGATATCATGGAATCAGTTGAAGATATTGTGATT
GTGGGAGCTGGAATTGCTGGCCTGACAACCTCTTTGGGACTTTACAGGCT
GGGAATCAGAAGCATGGTACTGGAGTCGTCAGAGAGTTTGAGGGTCACAG
GATTTGCATTCACAGTGTGGACTAATGCCTGGAAGGCCTTGGATGCTGTC
GGCATCGGTAATTCACTTCGCCAACAACATCAACAGCTCAGAAGCATAGT
TGCTACCCCCACCATATCGGGGAAACCCTCTTCTGAGAGGTCATTGAAGG
TCCAAGGAAAATACGGAGAACATGAAATGCGATGTGTGAGAAGGAAGTTG
TTACTAGAAACACTTGCAAAAGAGCTCCCAAGTGGTACTATCAGGTACTC
ATCACAGGTGGTTTCAATTGAGGAATCAGGACATTTTAAGCTGTTGCATC
TAGCTGATGGAACCATCCTCAAGACCAAGGTGTTGATTGGGTGTGATGGA
GTCAACTCCATAGTTGCAAAATGGCTCGGCTTCAAGAATCCAGCTTTTGT
AGGAAGATCTGCCATAAGGGGCTATTCAGATTTCAAGGGCAGTCATGGCT
TTGAGCCCAACTTCCTGCAGTTCTTTGG
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