FC932544

Overview
NameFC932544
Unique NameFC932544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932544 vs. ExPASy Swiss-Prot
Match: RNZN_ARATH (Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3)

HSP 1 Score: 329.717 bits (844), Expect = 8.972e-90
Identity = 157/208 (75.48%), Postives = 182/208 (87.50%), Query Frame = 3
Query:   72 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRAGILVMESTYV 695
            + MQ++GY +EGLSI GHETCIIFPSL +AFDIGRCP RA+SQ+FLFISH+HMDHIGGLPMYVATRGLY+MKPPTIIVP+ IKE VE LFEVHR++D SEL H LVGLD+GEEF +RKDL VKAFKT+HVIQSQGYVVYS K KLK+EY+GL G+EIK LK SG EIT ++ TPEVAFTGDT SDF+VDE N D L+A +LVMEST++
Sbjct:    5 KAMQIEGYPIEGLSIGGHETCIIFPSLRIAFDIGRCPHRAISQDFLFISHSHMDHIGGLPMYVATRGLYKMKPPTIIVPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIRKDLKVKAFKTFHVIQSQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAFTGDTTSDFVVDETNADALKAKVLVMESTFL 212          
BLAST of FC932544 vs. ExPASy Swiss-Prot
Match: RNZN_WHEAT (Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.220e-72
Identity = 126/170 (74.12%), Postives = 151/170 (88.82%), Query Frame = 3
Query:   78 MQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVT 587
            ++++GY VEG+SI GHETC+IFP+L LAFDIGRCP RA++Q+FLFISHAH+DHIGGLPMYVATRGLYR++PPTI VP  ++E VE+LF+VHR MD SELNHTLV LD+GEE+ +R+DL V+AFKTYH I SQGYV+YSVKQKLKQ+YLGLPG EIK+LK SG EIT TVT
Sbjct:    7 LEIEGYPVEGISIGGHETCVIFPTLSLAFDIGRCPQRAVAQDFLFISHAHLDHIGGLPMYVATRGLYRLRPPTIFVPKYLRELVERLFDVHRAMDQSELNHTLVPLDIGEEYELRRDLKVRAFKTYHTIPSQGYVIYSVKQKLKQDYLGLPGSEIKRLKLSGVEITNTVT 176          
BLAST of FC932544 vs. ExPASy Swiss-Prot
Match: RNZC_ARATH (Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.046e-70
Identity = 119/208 (57.21%), Postives = 162/208 (77.88%), Query Frame = 3
Query:   72 RGMQLQGYKVEGLSIAGHETCIIFPSLDLAFDIGRCPSRALSQNFLFISHAHMDHIGGLPMYVATRGLYRMKPPTIIVPSCIKEDVEQLFEVHRRMDHSELNHTLVGLDVGEEFCMRKDLFVKAFKTYHVIQSQGYVVYSVKQKLKQEYLGLPGDEIKKLKSSGTEITYTVTTPEVAFTGDTMSDFIVDEANIDVLRAGILVMESTYV 695
            +G++L+ Y +EG+S+ GHETC+I P L   FDIGRCPSRA+ Q FLFI+HAH+DHIGGLPMYVA+RGLY ++PP I VP  IKEDVE+L E+HR M   ELN  L+ L VGE + +R D+ V+ F T+HVI SQGYV+YSV++KL+++Y  L G +I+K+K SG EIT T+ +PE+AFTGDT S++++D  N D LRA +L+ E+T++
Sbjct:   74 KGVELESYAIEGISVGGHETCVIVPELKCVFDIGRCPSRAIQQKFLFITHAHLDHIGGLPMYVASRGLYNLEPPKIFVPPSIKEDVEKLLEIHRTMGQVELNVELIPLAVGETYELRNDIVVRPFATHHVIPSQGYVIYSVRKKLQKQYAHLKGKQIEKIKKSGVEITDTILSPEIAFTGDTTSEYMLDPRNADALRAKVLITEATFL 281          
The following BLAST results are available for this feature:
BLAST of FC932544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RNZN_ARATH8.972e-9075.48Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=... [more]
RNZN_WHEAT2.220e-7274.12Nuclear ribonuclease Z (Fragment) OS=Triticum aest... [more]
RNZC_ARATH6.046e-7057.21Ribonuclease Z, chloroplastic OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC34209G04EF PostHarveN Citrus clementina cDNA clone C34209G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932544 ID=FC932544; Name=FC932544; organism=Citrus clementina; type=EST; length=696bp
ATGATTGATTGCTCTGCCGCCGTTAGAATTACAGAATGGCCACGAAAGCC
AAAGAGGAGGAGAAGAGCGGGAGGGGGATGCAATTACAAGGGTACAAAGT
AGAAGGATTGTCGATAGCAGGCCACGAGACTTGCATTATTTTCCCCTCTC
TCGATTTAGCATTCGATATTGGACGATGCCCTTCTCGAGCTCTCTCTCAA
AATTTCCTCTTTATCTCCCACGCCCACATGGATCACATTGGAGGATTGCC
CATGTATGTTGCAACCAGAGGCCTCTACCGCATGAAGCCTCCCACAATTA
TTGTTCCCTCTTGTATTAAAGAAGATGTGGAACAACTCTTTGAGGTTCAT
AGAAGGATGGATCATTCTGAGCTGAACCATACACTGGTTGGCTTGGATGT
GGGGGAAGAGTTTTGCATGAGAAAGGACCTTTTTGTAAAAGCCTTCAAAA
CTTACCATGTTATACAAAGCCAGGGTTACGTAGTTTACTCCGTGAAGCAG
AAACTTAAACAAGAGTACCTTGGCCTTCCTGGGGATGAGATTAAGAAATT
GAAGTCGTCAGGCACGGAGATTACATATACCGTGACGACACCTGAAGTTG
CTTTTACAGGGGACACAATGTCCGATTTTATCGTTGATGAAGCTAATATT
GATGTTTTGAGGGCAGGNATTCTAGTTATGGAGAGCACCTATGTTG
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