FC932552

Overview
NameFC932552
Unique NameFC932552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 2.785e-51
Identity = 98/162 (60.49%), Postives = 122/162 (75.31%), Query Frame = 1
Query:  151 MGANVSGIIAD-SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPFDGGNK-MWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLHK 630
            MGAN+SG   +    D++ S + RL D+PE+CVAL++  LDPPEIC+LARLNR FR ASSADFIWESKLP+NY+ I  KV    + T ++    KK LYA+L  P+ FD G K +W+DKNTG LC+SISSKAL ITGIDDRRYW+HI T+ESRFQS AY+ +
Sbjct:    1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLI----KKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQ 158          

HSP 2 Score: 30.4166 bits (67), Expect = 2.785e-51
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  627 QIWWFEVDGEFE 662
            QIWWFEV GEFE
Sbjct:  158 QIWWFEVGGEFE 169          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.433e-44
Identity = 80/142 (56.34%), Postives = 108/142 (76.06%), Query Frame = 1
Query:  208 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPFDGG-NKMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLHK 630
            L+P L D+PE+CVA+++ +LDP EIC+ ++LNRAFRGAS AD +WESKLP NY+ +++K+LG        + L K+HLYA L   + FD    K+W+DK T G+C+SIS+K L+ITGIDDRRYW+HI T+ESRF SVAYL +
Sbjct:   24 LKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILG-----GFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQ 160          

HSP 2 Score: 29.6462 bits (65), Expect = 6.433e-44
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  627 QIWWFEVDGEFE 662
            QIWWFEVDGE +
Sbjct:  160 QIWWFEVDGEID 171          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.619e-42
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 1
Query:  208 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPFDGGN-KMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLHK 630
            L+P L D+PESCVAL+L +LDP EIC+ ++LN AF GAS ADF+WESKLP +Y+ I++K+LGS       D L K+ ++  L   + FD GN K W+DK TGGLC+  S+K L+ITGIDDRRYW+HI +++SRF SVAY+ +
Sbjct:   22 LQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGS-----FPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQ 158          

HSP 2 Score: 28.4906 bits (62), Expect = 2.619e-42
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  627 QIWWFEVDGEFE 662
            QIWWF+VDGE +
Sbjct:  158 QIWWFQVDGEID 169          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 8.842e-40
Identity = 81/161 (50.31%), Postives = 111/161 (68.94%), Query Frame = 1
Query:  151 MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPFDGGNK-MWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLHK 630
            MG+++S +   +NG    ++ P L D+PESCVA V M+L PPEIC LA LNR+FRGA+S+D +WE KLP NYQ ++D +            LSKK ++A L  P PFD  NK +W+D+ TG +C++IS++ ++ITGI+DRRYW  I TEESRF  VAYL +
Sbjct:    1 MGSSLSNLNDGTNG---LAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLL-----PPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQ 153          

HSP 2 Score: 26.9498 bits (58), Expect = 8.842e-40
Identity = 9/9 (100.00%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  627 QIWWFEVDG 653
            QIWWFEVDG
Sbjct:  153 QIWWFEVDG 161          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.402e-38
Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = 1
Query:  151 MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYL--SKKHLYARLCNPSPFDGGNK-MWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLHK 630
            MGA  S I+     +  +     L D+PE+C+  + M+++PPEIC LAR+N++F  AS +D +WE KLPSNY+F+V ++L    +  + D L   KK +YARLC P+ FD G K  WLDK +G + ++IS KA+ ITGIDDRRYW HIS++ESRF S+ YL +
Sbjct:    1 MGAASSSIV---RSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQ 160          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  220 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPF--DGGNKMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYL 624
            L D+PE CV++++    P + C LA +++ F  A  +D +WE  +P  Y+ ++       S++    +LSKK LY  LC+ S    DG   +W++K     C+ IS+  LAI   +  + W  I   ++RF++VA L
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLI-------SQSRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAEL 165          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  142 RALMGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLC-NPSPFDGGNK-MWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYL 624
            R++MG   SG      G+ +S        +PE C++ ++    P + C  A +++ F  A S+D +W+  LP  Y+ +V     S S+     + SKK LY  LC NP   + G K  WL+K +G  C+ +SSK L IT      YW  IS  ESRF  +A L
Sbjct:   41 RSMMGQYHSG------GEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLV-----SRSRV----FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAEL 188          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  184 SNGDELSSLRP-RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPF--DGGNKMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYL 624
            S  DE+S  R  R   +PE C++ V+ H  P + C +A ++++ + A+ +D +WE  LPS Y         SS      ++LSKK ++  L + S    +G    W++K +G  C  +S+  L I   D   YW  I+  ES+F+ VA L
Sbjct:   19 SRNDEISVTRASRFDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEY---------SSLVLQSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAEL 159          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 42/136 (30.88%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  226 DMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCNPSPF---DGGNKMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYL 624
            D+PE C+A ++    P + C+++ +++  R A+ ++  WE  LPS+Y+  +D         N +   S K L+ R C  SP    DG    W++K +G  C  +S++ L I  +D   +W  +S  +SRF+ VA L
Sbjct:    5 DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYID---------NSLSRFSNKQLFLRFCE-SPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGL 130          
BLAST of FC932552 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  232 PESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCN-PSPFDGGNK-MWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYL 624
            PE C++ ++   +P + C  A +++ F     +D IWE  LP++Y+ ++       S+     + SKK LY  LCN P  FD   K +WL+K +G  C+ +S+  L+I   D+ +YW  I   ESRF+ VA L
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI-----PPSRV----FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKL 141          
The following BLAST results are available for this feature:
BLAST of FC932552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P2A13_ARATH2.785e-5160.49F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH6.433e-4456.34F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH2.619e-4255.63F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A15_ARATH8.842e-4050.31F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH5.402e-3847.85F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
PP2B8_ARATH8.967e-1732.12Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
FB95_ARATH1.530e-1634.36F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B1_ARATH4.450e-1632.00F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
P2B12_ARATH7.591e-1630.88Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
P2B10_ARATH4.920e-1534.59F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC34209G12EF PostHarveN Citrus clementina cDNA clone C34209G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932552 ID=FC932552; Name=FC932552; organism=Citrus clementina; type=EST; length=754bp
GAAATCTCTTTTCTCTGACTTAAAGTTGTCCGAGTCTACGTGTCTGCTTA
TTCAATCCAAGTTGGGTCGATTAATGAGTAAGAAGACGCAACAACAAACC
CCATTGATTGAAAAATCAGATTTTGGGATCTGTCTGGGTTGAGAGCTTTA
ATGGGAGCTAATGTGTCTGGTATTATAGCGGACAGCAATGGAGATGAATT
GTCTTCATTGAGGCCGAGATTGAGCGACATGCCAGAGAGCTGCGTGGCAT
TGGTTTTGATGCATTTGGACCCACCCGAGATCTGCAAACTGGCTCGCTTG
AATCGGGCTTTTCGGGGAGCTTCTTCAGCTGATTTTATATGGGAATCCAA
ATTGCCTTCCAATTATCAGTTCATTGTTGACAAAGTTTTGGGTAGCAGTA
GTAAAACAAATATGGTTGATTATTTGAGTAAGAAACATCTTTATGCCAGG
CTTTGTAATCCCAGTCCCTTTGATGGTGGCAATAAGATGTGGCTGGATAA
AAATACTGGTGGCCTCTGTGTGTCTATTTCTTCCAAGGCTTTAGCCATTA
CCGGGATTGATGATCGGAGATACTGGACTCACATTTCAACTGAGGAATCT
AGGTTCCAATCAGTGGCGTATCTTCACAAATCTGGTGGTTTGAGGTAGAC
GGAGAGTTTGAGTTTCATTTCCTGTTGGGACAATAGCCTCTTCTTCAACT
ACACTTGGGAAGCTTTCAAGAGCTTGGTCGTCGGGTTGCAAGTTGACATG
TCAT
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