FC932557

Overview
NameFC932557
Unique NameFC932557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11083 contig Ccv1_Contig11083:94..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.063e-47
Identity = 94/143 (65.73%), Postives = 106/143 (74.13%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQ---------SXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVI 630
            QRS+PTPFLTKTYQLV+D   D++ISWN+DGTTF+VW P  FARDLLP+YFKHNNFSSFVRQLNTYGF+KVVPDRWEFSNDCF+RGE+ LLR+IQRRKI          +                    IVSPSNSGEEQVI
Sbjct:   53 QRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQPAMAAAAAAAAAAVAASAVTVAAVPVVAHIVSPSNSGEEQVI 195          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.175e-46
Identity = 89/131 (67.94%), Postives = 106/131 (80.92%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEE 621
            QRS+PTPFLTKT+ LV+D +IDDVISWN+DG++F+VWNPT FA+DLLP++FKHNNFSSFVRQLNTYGFKKVVPDRWEFSND F+RGE++LLREIQRRKI +                    +VSPSNSGE+
Sbjct:   17 QRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTHQTVVAPSSEQRNQTM---VVSPSNSGED 144          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.945e-46
Identity = 91/139 (65.47%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIV-----SPSNSGEEQVI 630
            QR++PTPFLTKTYQLVDD A+DDVISWN DG+TFVVW P  FARDLLP+YFKHNNFSSFVRQLNTYGF+K+VPDRWEF+NDCFRRGE++LL EI RRK+ +                   P+      SP  SGEEQVI
Sbjct:   42 QRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKV-TPPAPAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVI 179          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.216e-45
Identity = 80/99 (80.81%), Postives = 93/99 (93.94%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKI 525
            QRS+PTPFLTKTYQLV+D A+DDVISWN+DG+TFVVW P  FARDLLP+YFKHNNFSSFVRQLNTYGF+K+VPDRWEF+NDCFRRGE++LL +I RRK+
Sbjct:   32 QRSLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKV 130          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSFB1_ARATH (Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.286e-39
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            QRS+P PFL+KTYQLVDD + DDV+SWN++GT FVVW    FA+DLLP+YFKHNNFSSF+RQLNTYGF+K VPD+WEF+ND FRRG + LL +I+RRK
Sbjct:    8 QRSVPAPFLSKTYQLVDDHSTDDVVSWNEEGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRK 105          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.178e-38
Identity = 72/97 (74.23%), Postives = 82/97 (84.54%), Query Frame = 1
Query:  232 RSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            +++P PFLTKTYQLVDD A D V+SW  D TTFVVW P  FARDLLP YFKHNNFSSFVRQLNTYGF+K+VPDRWEF+N+ F+RGE+ LL EI RRK
Sbjct:   29 KAVPAPFLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRK 125          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.009e-38
Identity = 71/98 (72.45%), Postives = 85/98 (86.73%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            QR+ P PFL KTYQLVDD A DDVISWN+ GTTFVVW    FA+DLLP+YFKHNNFSSFVRQLNTYGF+K+VPD+WEF+N+ F+RG+++LL  I+RRK
Sbjct:    3 QRTAPAPFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRK 100          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.969e-38
Identity = 72/102 (70.59%), Postives = 85/102 (83.33%), Query Frame = 1
Query:  229 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDG-TTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQS 531
            Q+++P PFLTKTYQLVDD A D ++SW  D  +TFVVW P  FARD+LP YFKHNNFSSFVRQLNTYGF+KVVP+RWEF+N+ FR+GE+QLL EI RRK  S
Sbjct:   18 QKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSS 119          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.102e-36
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  232 RSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRK 522
            + +P PFLTKTYQLVDD   D ++SW +D TTFVVW P  FARDLLP YFKHNNFSSFVRQLNTYGF+K+V DRWEF+N+ FR+G + LL EI RRK
Sbjct:   29 KPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRK 125          
BLAST of FC932557 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.439e-36
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 1
Query:  241 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFRRGEQQLLREIQRRKIQS 531
            P PFL+KTYQLVDD + DDV+SW +D  TFVVW P  FARDLLP YFKHNNFSSFVRQLNTYGF+K+V DRWEF+N+ FR+G + LL EI RRK  S
Sbjct:   34 PAPFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSS 130          
The following BLAST results are available for this feature:
BLAST of FC932557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFB2B_ARATH1.063e-4765.73Heat stress transcription factor B-2b OS=Arabidops... [more]
HFB2A_ARATH1.175e-4667.94Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB2B_ORYSJ9.945e-4665.47Heat stress transcription factor B-2b OS=Oryza sat... [more]
HFB2C_ORYSJ2.216e-4580.81Heat stress transcription factor B-2c OS=Oryza sat... [more]
HSFB1_ARATH5.286e-3971.43Heat stress transcription factor B-1 OS=Arabidopsi... [more]
HSFB4_ARATH1.178e-3874.23Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HSF24_SOLPE2.009e-3872.45Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB4C_ORYSJ9.969e-3870.59Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB4B_ORYSJ1.102e-3670.10Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB4D_ORYSJ1.439e-3671.13Heat stress transcription factor B-4d OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34209H07EF PostHarveN Citrus clementina cDNA clone C34209H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932557 ID=FC932557; Name=FC932557; organism=Citrus clementina; type=EST; length=678bp
GGTTCCCTCTCCCTCTTTAACTCCTCATTCCGAAATGACGAACCTTCTAG
AATCACCATAACCAACTTCTCACCTTCACCCTCCCCACAAAGAAAAATTA
AAGAATAAAAAAAATCTCCCCTTTCAACCTGATTTCAATTACACTTTATC
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTAGTGCCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCGCCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGGTGTACCGCTCAC
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