FC932560

Overview
NameFC932560
Unique NameFC932560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932560 vs. ExPASy Swiss-Prot
Match: DHNA_ARATH (Probable NADH dehydrogenase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 2 
Query:    2 ESQIFEADLVLWTVGSKPLLPHVEPPNNRLHDLPLNARGQAETDETLCVKGHPRIFALGDSSALRDSSGRPLPATAQVAFQQADFAGWNLWAAINDRPLLPF 307
            ESQI EAD+VLWTVG+KPLL  +EP    +  LPLNARGQAETDETL VKGHPRIFALGDSS+LRDS+G+ LP TAQVAFQ+ADF GWN+WAAIN+RPLLPF
Sbjct:  339 ESQIIEADIVLWTVGAKPLLTKLEPSGPNV--LPLNARGQAETDETLRVKGHPRIFALGDSSSLRDSNGKILPTTAQVAFQEADFTGWNIWAAINNRPLLPF 438

HSP 2 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:  472 RFQNLGEMMTLGRNDAAVSPSFVEGVTLDGPIGHSARKLAYLIRXTDR*APA*VGVSWLTKSAIDSVALLQSALTR 699
            RFQNLGEMMTLGR DAA+SPSF+EG+TL+GPIGH+ARKLAYLIR         VG+SW  KSA+DS+ALLQS LT+
Sbjct:  439 RFQNLGEMMTLGRYDAAISPSFIEGLTLEGPIGHAARKLAYLIRLPTDEHRFKVGISWFAKSAVDSIALLQSNLTK 514
The following BLAST results are available for this feature:
BLAST of FC932560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DHNA_ARATH4.387e-3977.45Probable NADH dehydrogenase, chloroplastic/mitocho... [more]
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Properties
Property NameValue
Genbank descriptionC34209H10EF PostHarveN Citrus clementina cDNA clone C34209H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932560 ID=FC932560; Name=FC932560; organism=Citrus clementina; type=EST; length=713bp
AGAAAGTCAAATTTTTGAAGCAGACCTGGTACTGTGGACTGTCGGGTCCA
AACCTCTTCTTCCTCATGTGGAGCCACCCAATAACAGGCTCCATGATCTT
CCCCTTAATGCTCGAGGACAAGCAGAAACAGATGAAACTCTCTGTGTTAA
GGGCCATCCTCGTATATTTGCACTTGGTGACTCTTCTGCTCTACGAGATT
CAAGTGGAAGGCCTCTTCCAGCAACCGCACAGGTTGCCTTTCAACAGGCT
GACTTTGCTGGTTGGAATCTGTGGGCAGCAATCAATGATCGGCCATTGTT
ACCCTTCAGTGGGAATGCTGGCTATTTTGAGCAATATCCTAACATGGTGT
TAGAAATATTTTCATTGTTGATATCTTGAATGGCTGCACATTTTGTTCAT
AACTTACGCCAACTGGATCAGTTCTGAAAACATCTGTCATCATGGCCTTG
CACCCTTGCCCATCAATTTCCAGGTTTCAAAATTTAGGGGAGATGATGAC
TCTTGGTAGAAACGATGCTGCTGTCTCACCAAGTTTTGTTGAGGGGGTAA
CGTTAGATGGCCCTATTGGTCACAGCGCGAGGAAATTAGCATACTTGATC
AGATTNACCGACCGATGAGCACCGGCTTAAGTTGGAGTCAGCTGGCTCAC
CAAGTCTGCCATAGATTCAGTTGCTTTATTACAGAGCGCCTTAACAAGGT
TTTATCAAGCTCA
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