FC932563

Overview
NameFC932563
Unique NameFC932563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:8..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 74/218 (33.94%), Postives = 95/218 (43.58%), Query Frame = 1
Query:   70 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAVFFD--------YESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTN-----RXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            MATP E SAL  I+++L  E SP+                          + ND   FD        +E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+                       P + +   F                    HYRGVR RPWGK+AAEIRDPTRRG RVWLGTF+T            F+LRGS
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLP------------------TTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNPPRVTVQSNRKPPLKIAP---PNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGS 187          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 73/213 (34.27%), Postives = 91/213 (42.72%), Query Frame = 1
Query:   70 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAV----FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            MATP E SAL FIE+HL  E SP+A                           + +     F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE                      +   AE    T              HYRGVR+RPWGK+AAEIRDP +RG RVWLGTFDT            F+LRGS
Sbjct:    1 MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPIDFSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGS 206          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVRRRPWGKYAAEIRDP ++GVRVWLGTFDT            F+LRGS
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGS 122          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT            F+LRGS
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGS 195          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 33/51 (64.71%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRG 681
            HYRGVRRRPWGKYAAEIRDP ++G R+WLGT+DT            FQLRG
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRG 137          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP R+G RVWLGTFDT            ++LRGS
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGS 188          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS
Sbjct:  116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGS 167          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  529 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGS 198          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            YRGVR+RPWGK+AAEIRD TR+G+RVWLGTFDT            F L+GS
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGS 132          
BLAST of FC932563 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1
Query:  532 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS 684
            YRGVRRRPWGK+AAEIRDP + G RVWLGT++T            FQLRGS
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGS 142          
The following BLAST results are available for this feature:
BLAST of FC932563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
EF103_ARATH2.510e-2033.94Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH1.799e-1834.27Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH1.207e-1469.23Ethylene-responsive transcription factor ERF105 OS... [more]
ERF5_TOBAC1.334e-1365.38Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF104_ARATH1.334e-1364.71Ethylene-responsive transcription factor ERF104 OS... [more]
ERF5_NICSY2.972e-1363.46Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF101_ARATH2.516e-1259.62Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF100_ARATH2.516e-1259.62Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF94_ARATH3.286e-1262.75Ethylene-responsive transcription factor ERF094 OS... [more]
ERF99_ARATH4.292e-1262.75Ethylene-responsive transcription factor 13 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210A02EF PostHarveN Citrus clementina cDNA clone C34210A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932563 ID=FC932563; Name=FC932563; organism=Citrus clementina; type=EST; length=686bp
GATACTCAAAACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGA
CACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCG
AGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTT
AGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTC
TGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATG
AATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACT
TGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAAT
CCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAA
TATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATC
TCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAA
GGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGA
GGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGC
GTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGC
GTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAA
back to top