FC932575

Overview
NameFC932575
Unique NameFC932575
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11346 contig Ccv1_Contig11346:8..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.888e-57
Identity = 96/114 (84.21%), Postives = 106/114 (92.98%), Query Frame = 1
Query:  121 QEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 462
            + DEK VNAARR+GADIETVRK +AGTNKAASS TSLNT+ LD+DTENL H+RVP+ELKKAI+QAR DKKLTQSQLAQ+INEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:   26 KRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          

HSP 2 Score: 52.373 bits (124), Expect = 7.888e-57
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2
Query:   47 MAGIGPITQDWEPVVIKKKAPNAATKRTRRSL 142
            MAGIGPITQDWEPVVI+KK  NAA KR  +++
Sbjct:    1 MAGIGPITQDWEPVVIRKKPANAAAKRDEKTV 32          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.592e-48
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 462
            + +P    + DEK VNAARR+GADIETVRK +AG+NKAASS TSLNT+KLD+DTENL+HDRVP+ELKKAI+QAR +KKLTQSQLA LINEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:   18 KRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.954e-28
Identity = 60/114 (52.63%), Postives = 85/114 (74.56%), Query Frame = 1
Query:  127 DEKVVNAARRAGADIETVRKSHAGTNKAASSSTS--LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 462
            D K VNAA R G  ++TV+K  AG+NK   S+    +NT+KL+E+TE  A DRV +E++  I +AR +KK++Q+ LA+ INE+ QV+QEYE+GKA+PNQ +L K+E+ LGVKLR
Sbjct:   30 DPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLR 143          

HSP 2 Score: 28.4906 bits (62), Expect = 1.954e-28
Identity = 11/28 (39.29%), Postives = 17/28 (60.71%), Query Frame = 2
Query:   59 GPITQDWEPVVIKKKAPNAATKRTRRSL 142
            G +TQDWEPVV+ K    +   R  +++
Sbjct:    7 GAVTQDWEPVVLHKSKQKSQDLRDPKAV 34          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_HUMAN (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.788e-26
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 492
            ++ P     + ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   14 KKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_BOVIN (Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.788e-26
Identity = 65/132 (49.24%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 492
            ++ P     + ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   14 KKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.067e-25
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 462
            ++ P     + ++ V AA+R G D+ET +K  AG NK      + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ K+ERA+G+KLR
Sbjct:   14 KKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLDRETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGKIERAIGLKLR 133          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_RAT (Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 492
            ++ P     + ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   14 KKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_MOUSE (Endothelial differentiation-related factor 1 OS=Mus musculus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.393e-25
Identity = 64/132 (48.48%), Postives = 83/132 (62.88%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXXINK 492
            ++ P     + ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:   14 KKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.053e-25
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   97 EESP*RRHQEDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 462
            ++ P     + ++ + AA+R G ++ET +K  AG NK    + + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YE GKAIPN Q++ K+ER +G+KLR
Sbjct:   14 KKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLDRETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGKIERVIGLKLR 133          
BLAST of FC932575 vs. ExPASy Swiss-Prot
Match: EDF1_DANRE (Endothelial differentiation-related factor 1 homolog OS=Danio rerio GN=edf1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.294e-25
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  124 EDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 462
            + ++ V AA+R G  +ET +K  AG NK      + NT KLD +TE L+H RVP E+ K I Q R +K LTQ  LA  INEKPQ+I EYE GKAIPN Q++ K+ERA+G+KLR
Sbjct:   22 KSKQAVTAAQRKGEAVETSKKWAAGQNK--QHVVTKNTAKLDRETEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGKIERAIGLKLR 132          
The following BLAST results are available for this feature:
BLAST of FC932575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MBF1A_ARATH7.888e-5784.21Multiprotein-bridging factor 1a OS=Arabidopsis tha... [more]
MBF1B_ARATH7.592e-4879.51Multiprotein-bridging factor 1b OS=Arabidopsis tha... [more]
MBF1C_ARATH1.954e-2852.63Multiprotein-bridging factor 1c OS=Arabidopsis tha... [more]
EDF1_HUMAN4.788e-2649.24Endothelial differentiation-related factor 1 OS=Ho... [more]
EDF1_BOVIN4.788e-2649.24Endothelial differentiation-related factor 1 OS=Bo... [more]
EDF1_CHICK1.067e-2550.82Endothelial differentiation-related factor 1 homol... [more]
EDF1_RAT1.393e-2548.48Endothelial differentiation-related factor 1 OS=Ra... [more]
EDF1_MOUSE1.393e-2548.48Endothelial differentiation-related factor 1 OS=Mu... [more]
EDF1_XENLA4.053e-2548.36Endothelial differentiation-related factor 1 homol... [more]
EDF1_DANRE5.294e-2553.10Endothelial differentiation-related factor 1 homol... [more]

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Properties
Property NameValue
Genbank descriptionC34210B03EF PostHarveN Citrus clementina cDNA clone C34210B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932575 ID=FC932575; Name=FC932575; organism=Citrus clementina; type=EST; length=651bp
CAAAGAAAATCTTTTAAGTGAAGAGATGTTTGATCGAGGAGTGGACATGG
CCGGAATCGGACCGATCACACAGGACTGGGAGCCGGTGGTGATTAAGAAG
AAAGCCCCTAACGCCGCCACCAAGAGGACGAGAAGGTCGTTAACGCTGCC
CGCCGCGCCGGTGCCGATATCGAGACTGTCAGAAAATCACATGCTGGCAC
AAACAAGGCTGCCTCGAGTAGCACTTCTCTGAACACCAGGAAGCTTGATG
AAGATACAGAGAACCTTGCTCATGATCGAGTGCCTAGTGAACTCAAGAAA
GCCATTGTTCAGGCACGAAATGATAAGAAACTTACCCAGTCTCAACTTGC
TCAGTTGATCAATGAGAAGCCCCAGGTGATTCAGGAATATGAATCAGGAA
AAGCCATTCCAAATCAGCAGATACTTACCAAGCTGGAGAGGGCCCTTGGT
GTGAAGCTTCGAGGAAAGAAGTGAGGAGGAGGGATAAATAAAAACTGCTA
CCAGGACTTGATGTTGTGTCCTGTTGTTGAGTCTTCAAAATGGGTGCTGT
ATATGAATGTTTTCTCCTATGGTTATGGCTCGGCACATAACTAGTGTCCT
TGACTGTTACTCTTGTCATGACTGTGAATCTATTAAGCCTTTTATCTTTT
C
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