FC932594

Overview
NameFC932594
Unique NameFC932594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932594_ssr539 microsatellite FC932594_ssr539:539..550. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10970 contig Ccv1_Contig10970:665..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.304e-96
Identity = 181/231 (78.35%), Postives = 187/231 (80.95%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDS N+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDI+YITGESKKAVENSPFLEKLKKKG EVLYMVDAIDEYA+GQLKEFEGKKLVSAT                          CKVIKDVLG               PCCLVTGEYGWTA
Sbjct:  349 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTA 579
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.304e-96
Identity = 181/231 (78.35%), Postives = 187/231 (80.95%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDS N+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDI+YITGESKKAVENSPFLEKLKKKG EVLYMVDAIDEYA+GQLKEFEGKKLVSAT                          CKVIKDVLG               PCCLVTGEYGWTA
Sbjct:  349 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTA 579
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 6.470e-96
Identity = 180/231 (77.92%), Postives = 186/231 (80.52%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+ K+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT                          CKVIK+VLG               PCCLVTGEYGWTA
Sbjct:  351 IPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTA 581
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 6.470e-96
Identity = 180/231 (77.92%), Postives = 186/231 (80.52%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+ K+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT                          CKVIK+VLG               PCCLVTGEYGWTA
Sbjct:  351 IPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRKEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTA 581
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.104e-95
Identity = 178/231 (77.06%), Postives = 185/231 (80.09%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPEYL FVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDS N+ K AELLRYHSTKSGDE+TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEY++GQLKEFEGKKLVSAT                          CKV+KDVLG               PCCLVTGEYGWTA
Sbjct:  349 IPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVMKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTA 579
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 348.591 bits (893), Expect = 1.882e-95
Identity = 179/231 (77.49%), Postives = 187/231 (80.95%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQ++IYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT                          CKVIK+VLG               PCCLVTGEYGWTA
Sbjct:  351 IPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTA 581
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 1.882e-95
Identity = 179/231 (77.49%), Postives = 187/231 (80.95%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQ++IYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT                          CKVIK+VLG               PCCLVTGEYGWTA
Sbjct:  351 IPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKRQEELKEKFEGLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTA 581
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP82_TOBAC (Heat shock protein 82 (Fragment) OS=Nicotiana tabacum GN=HSP82 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 5.126e-93
Identity = 173/232 (74.57%), Postives = 185/232 (79.74%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT-XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPEYLGFVKG+VDS+DLPLNISRE LQQNKILKVIRKNLVKKCIE+F EIAENKEDYNKFYE+FSKNLKLGIHEDS N+ KLA+LLRYHSTKSGDE+TSLKDYVTRMKEGQ DIYYITGESKKAVENSPFLE+LKKKGYEVLYMVDAIDEYAVGQLKE++GKKLVSAT                           CK+IKD+LG               PCCLVTGEYGWTA
Sbjct:  150 IPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDDSEEEKKKKEEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTA 381
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 9.667e-92
Identity = 171/232 (73.71%), Postives = 185/232 (79.74%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT-XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPEYLGFVKG+VDS+DLPLNISRE LQQNKILKVIRKNLVKKCIE+F EIAENK+DYNKFYE+FSKNLKLGIHEDS N+ KLA+LLRY+STKSGDELTSLKDYVTRMKEGQ DIYYITGESKKAVENSPFLE+LKKKGYEVL+MVDAIDEYAVGQLKE++GKKLVSAT                           CK+IKD+LG               PCCLVTGEYGWTA
Sbjct:  354 IPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKDDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDDDEEEKKKREEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTA 585
[Close]
BLAST of FC932594 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.048e-90
Identity = 168/233 (72.10%), Postives = 184/233 (78.97%), Query Frame = 1 
Query:    1 IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT--XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTA 693
            IPE+LGFVKG+VDS+DLPLNISRETLQQNKILKVIRKNLVKKCIE+F EIAENK+DY KFY++FSKN+KLGIHEDS N+ KLA+LLRYHSTKSGDE TSLKDYVTRMKEGQ DIYYITGES+KAVENSPFLE+LKKKGYEVL+MVDAIDEYAVGQLKE++GKKLVSAT                            CKVIKD+LG               PCCLVTGEYGWTA
Sbjct:  364 IPEWLGFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFFEIAENKDDYAKFYDAFSKNIKLGIHEDSQNRAKLADLLRYHSTKSGDETTSLKDYVTRMKEGQKDIYYITGESRKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDEDDEEAKKRREERKKRFEELCKVIKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWTA 596
The following BLAST results are available for this feature:
BLAST of FC932594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
HSP83_ARATH1.304e-9678.35Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH1.304e-9678.35Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ6.470e-9677.92Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI6.470e-9677.92Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP80_SOLLC1.104e-9577.06Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_ORYSJ1.882e-9577.49Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ1.882e-9577.49Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP82_TOBAC5.126e-9374.57Heat shock protein 82 (Fragment) OS=Nicotiana taba... [more]
HSP83_IPONI9.667e-9273.71Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP82_MAIZE9.048e-9072.10Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210C10EF PostHarveN Citrus clementina cDNA clone C34210C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932594 ID=FC932594; Name=FC932594; organism=Citrus clementina; type=EST; length=696bp
ATCCCCGAATACCTTGGTTTTGTTAAGGGTATTGTTGATTCCGAGGATCT
CCCTCTTAACATCTCAAGAGAAACACTCCAGCAGAACAAGATCTTGAAGG
TCATCCGCAAGAACTTGGTGAAGAAGTGCATTGAGCTCTTCCAAGAGATT
GCTGAGAACAAGGAAGATTACAACAAGTTTTATGAGTCATTCTCTAAGAA
CCTAAAGCTTGGTATCCATGAGGACTCCACCAACAAGACCAAGCTTGCTG
AGCTGCTCCGATACCATTCCACCAAGAGTGGTGATGAGTTGACTAGCTTG
AAGGATTATGTGACCAGAATGAAGGAAGGCCAGAATGATATCTACTACAT
CACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCCCCATTTCTTGAGAAGC
TCAAGAAGAAGGGCTATGAAGTGCTCTACATGGTTGATGCCATAGATGAG
TACGCTGTTGGTCAGCTCAAGGAGTTTGAGGGAAAGAAGCTTGTCTCAGC
AACCAAAGAAGGTCTCAAGCTTGACGAGAGTGAAGATGAGAAGAAGAAGA
AGGAAACCTTGAAGGAGAAATTTGAGGGTCTCTGCAAGGTGATCAAGGAT
GTTTTGGGTGACAAGGTCGAGAAGGTTGTGGTGTCTGACCGTGTTGTTGA
CTCACCCTGCTGTTTGGTGACTGGTGAGTATGGATGGACAGCCACA
back to top