FC932604

Overview
NameFC932604
Unique NameFC932604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_KLULA (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=PDA1 PE=3 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 4.732e-84
Identity = 148/224 (66.07%), Postives = 179/224 (79.91%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYVRGSEPKWMRGRTVDETF 672
            IVGAQVP+GAGLAFA QY  +   S  LYGDGASNQGQVFE+FNMAKLW LP +F CENNKYGMGT+A+RSSA+TEY+KRGQYIPGLKVNGMD+LA   A +++K++ +SGNGP+VLEY TYRYGGHSMSDPGTTYR+R+EIQ MRS NDPIAGLK  +LE G+ +E+E+K  DK AR  VD +V  A+  P P+     LFED+YV GSE   +RGR  ++T+
Sbjct:  178 IVGAQVPLGAGLAFAHQYKHEDACSFALYGDGASNQGQVFESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFAKDWTVSGNGPIVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLLELGIATEDEIKAYDKAARKYVDEQVELADAAPAPEAKMSILFEDVYVPGSETPTLRGRLQEDTW 401          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_YEAST (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=PDA1 PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.067e-83
Identity = 147/224 (65.62%), Postives = 180/224 (80.36%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYVRGSEPKWMRGRTVDETF 672
            IVGAQVP+GAGLAFA QY  +   S  LYGDGASNQGQVFE+FNMAKLW LPV+F CENNKYGMGT+ASRSSA+TEY+KRGQYIPGLKVNGMD+LA   A +++K++ +SG GPLVLEY TYRYGGHSMSDPGTTYR+R+EIQ MRS NDPIAGLK  +++ G+ +E E+K  DK+AR  VD +V  A+  P P+     LFED+YV+G+E   +RGR  ++T+
Sbjct:  186 IVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLWNLPVVFCCENNKYGMGTAASRSSAMTEYFKRGQYIPGLKVNGMDILAVYQASKFAKDWCLSGKGPLVLEYETYRYGGHSMSDPGTTYRTRDEIQHMRSKNDPIAGLKMHLIDLGIATEAEVKAYDKSARKYVDEQVELADAAPPPEAKLSILFEDVYVKGTETPTLRGRIPEDTW 409          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_SCHPO (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=pda1 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.006e-83
Identity = 144/226 (63.72%), Postives = 176/226 (77.88%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYVRGSEPKWMRGRTVDETFYY 678
            IVGAQ+P+GAG+ FAQ+Y E+P T+  LYGDGASNQGQ FEAFNMAKLW LPV+F CENNKYGMGTSA RSSA+TE+YKRGQYIPGL VNGMDVLA   A +++K Y +  + PL++E+VTYRYGGHSMSDPGTTYRSREE+Q++R+  DPI GLK+ ++EWGV +  ELK ++K  R  VD EV  AE+ P PD    +LF D+YV G+EP + RGR   E   Y
Sbjct:  183 IVGAQIPLGAGIGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARGRNSLEYHQY 408          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_CAEEL (Probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.024e-67
Identity = 130/234 (55.56%), Postives = 164/234 (70.09%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNT--ARNLFEDIYVRGSEPKWMRGRTVDETFYY*IVSPY 696
            IVGAQ P+GAG+A A +Y EQ N  + LYGDGA+NQGQ+FEA NMAKLW LPVLF CENN +GMGT+A RSSA TEYY RG Y+PG+ V+GMD+LA + A +++K Y  SG GPL++E  TYRY GHSMSDPGT+YR+REEIQ +R T DPI G K +++   + +EEELK +DK  R  VD    EA K+   D       L+ DIY   +  + +RG T+DET    IV P+
Sbjct:  160 IVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAANQGQLFEATNMAKLWDLPVLFVCENNGFGMGTTAERSSASTEYYTRGDYVPGIWVDGMDILAVREATKWAKEYCDSGKGPLMMEMATYRYHGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDRIITSSLATEEELKAIDKEVRKEVD----EALKIATSDGVLPPEALYADIY-HNTPAQEIRGATIDET----IVQPF 384          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPT_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.391e-65
Identity = 114/188 (60.64%), Postives = 147/188 (78.19%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEA 564
            IVGAQ P+G G+AFA +Y +Q N  I L+GDGA+NQGQ++E+ NMAKLW+LPVL+ CENN YGMGTSA+RSSA T+YY RG Y+PG  V+GMDVLA + A+++ K +  +G GPL++E  TYRYGGHSMSDPGT+YR+REEIQ +R T DPI G K K++  G+ +E+ELK +DK  R  VDA V +A
Sbjct:  157 IVGAQQPLGTGIAFAMKYKKQKNVCITLFGDGATNQGQLYESMNMAKLWELPVLYVCENNGYGMGTSAARSSASTDYYTRGDYVPGFWVDGMDVLAVRQAIRWGKEWCNAGKGPLMIEMATYRYGGHSMSDPGTSYRTREEIQEVRKTRDPITGFKDKIVTAGLVTEDELKEVDKEIRKEVDAAVKQA 344          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_ASCSU (Pyruvate dehydrogenase E1 component subunit alpha type I, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 109/188 (57.98%), Postives = 147/188 (78.19%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEA 564
            IVGAQ P+G G+AFA +Y ++ N  I ++GDGA+NQGQ+FE+ NMAKLW LPVL+ CENN YGMGT+A+RSSA T+YY RG Y+PG+ V+GMDVLA + AV+++K +  +G GPL++E  TYRY GHSMSDPGT+YR+REE+Q +R T DPI G K K++  G+ +E+E+K +DK  R  +DA V +A
Sbjct:  162 IVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQGQLFESMNMAKLWDLPVLYVCENNGYGMGTAAARSSASTDYYTRGDYVPGIWVDGMDVLAVRQAVRWAKEWCNAGKGPLMIEMATYRYSGHSMSDPGTSYRTREEVQEVRKTRDPITGFKDKIVTAGLVTEDEIKEIDKQVRKEIDAAVKQA 349          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_DICDI (Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.984e-62
Identity = 112/208 (53.85%), Postives = 154/208 (74.04%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYVR 624
            IVGAQ P+GAG+AFAQ+YN+  N  + +YGDGA+NQGQ+FEAFNMA LWKLPV+F CENNKYGMGTS  RS+A  ++Y RG Y+ GLKV+GMDV A K A +Y+  +  +GNGP++LE  TYRY GHSMSDPG TYR+REE+  +R T DPI  ++Q +L+  + +E++L  +++T R  ++    +A   P+P   AR LF ++Y++
Sbjct:  157 IVGAQCPLGAGIAFAQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFICENNKYGMGTSQKRSTAGHDFYTRGHYVAGLKVDGMDVFAVKEAGKYAAEWCRAGNGPIILEMDTYRYVGHSMSDPGITYRTREEVNHVRQTRDPIENIRQIILDNKIATEDQLAAIEETVRDEMEKASEKAIAAPLPQ--ARELFTNVYLQ 362          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA2_ARATH (Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.793e-60
Identity = 110/208 (52.88%), Postives = 152/208 (73.08%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVDAEVAEAEKMPVPDNTARNLFEDIYVR 624
            IVGAQ+P+G GLAFAQ+YN+    +  LYGDGA+NQGQ+FEA N++ LW LP +  CENN YGMGT+  RS+    Y+KRG Y+PGLKV+GMD LA K A +++K +A+  NGP++LE  TYRY GHSMSDPG+TYR+R+EI  +R   DPI  +++ +L   + +E+ELK ++K  R  VD  VA+A++ P+PD  A  LF ++YV+
Sbjct:  170 IVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENNHYGMGTATWRSAKSPAYFKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPIILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKEIRKEVDDAVAQAKESPIPD--ASELFTNMYVK 374          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.765e-60
Identity = 113/225 (50.22%), Postives = 159/225 (70.67%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVD--AEVAEAEKMPVPDNTARNLFED---IYVRGSEPKWMRGRTV 660
            IVGAQVP+GAG+A A +YN +    + LYGDGA+NQGQ+FEA+NMA LWKLP +F CENN+YGMGTS  R++A T+YYKRG +IPGL+V+GMD+L  + A +++  Y  SG GP+++E  TYRY GHSMSDPG +YR+REEIQ +RS +DPI  LK +M+   + S EELK +D   R  ++  A+ A A+  P  +    +++       VRG+  +W++ ++V
Sbjct:  166 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN-QWIKFKSV 389          
BLAST of FC932604 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.765e-60
Identity = 113/225 (50.22%), Postives = 159/225 (70.67%), Query Frame = 1
Query:    1 IVGAQVPVGAGLAFAQQYNEQPNTSIVLYGDGASNQGQVFEAFNMAKLWKLPVLFGCENNKYGMGTSASRSSALTEYYKRGQYIPGLKVNGMDVLATKAAVQYSKNYAISGNGPLVLEYVTYRYGGHSMSDPGTTYRSREEIQRMRSTNDPIAGLKQKMLEWGVTSEEELKTLDKTARANVD--AEVAEAEKMPVPDNTARNLFED---IYVRGSEPKWMRGRTV 660
            IVGAQVP+GAG+A A +YN +    + LYGDGA+NQGQ+FEA+NMA LWKLP +F CENN+YGMGTS  R++A T+YYKRG +IPGL+V+GMD+L  + A +++  Y  SG GP+++E  TYRY GHSMSDPG +YR+REEIQ +RS +DPI  LK +M+   + S EELK +D   R  ++  A+ A A+  P  +    +++       VRG+  +W++ ++V
Sbjct:  166 IVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGAN-QWIKFKSV 389          
The following BLAST results are available for this feature:
BLAST of FC932604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ODPA_KLULA4.732e-8466.07Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_YEAST3.067e-8365.63Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_SCHPO4.006e-8363.72Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_CAEEL4.024e-6755.56Probable pyruvate dehydrogenase E1 component subun... [more]
ODPT_ASCSU8.391e-6560.64Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ASCSU1.583e-6357.98Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_DICDI2.984e-6253.85Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA2_ARATH2.793e-6052.88Pyruvate dehydrogenase E1 component subunit alpha-... [more]
ODPA_RAT4.765e-6050.22Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE4.765e-6050.22Pyruvate dehydrogenase E1 component subunit alpha,... [more]

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Properties
Property NameValue
Genbank descriptionC34210D08EF PostHarveN Citrus clementina cDNA clone C34210D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932604 ID=FC932604; Name=FC932604; organism=Citrus clementina; type=EST; length=733bp
ATTGTCGGTGCTCAGGTGCCCGTCGGTGCCGGTCTCGCCTTCGCCCAACA
GTACAACGAGCAGCCCAACACCTCCATCGTTCTCTACGGTGACGGTGCCT
CTAACCAGGGTCAGGTGTTCGAAGCCTTCAACATGGCCAAGCTGTGGAAG
CTTCCCGTTCTCTTCGGTTGTGAGAACAATAAGTACGGCATGGGTACCTC
CGCCTCGCGCTCCTCCGCTCTGACCGAGTACTACAAGCGTGGTCAGTACA
TTCCCGGTCTCAAGGTCAATGGAATGGACGTCCTTGCCACCAAGGCCGCT
GTCCAGTACAGTAAGAACTACGCCATCAGCGGCAACGGACCTCTCGTCCT
AGAGTACGTCACGTACCGTTACGGTGGTCACTCCATGTCAGACCCCGGTA
CTACTTACCGAAGCCGTGAGGAGATCCAGCGCATGCGCAGCACCAACGAT
CCCATCGCTGGCCTTAAGCAGAAGATGCTCGAGTGGGGCGTCACCTCCGA
GGAGGAGCTCAAGACTCTCGACAAGACCGCCCGTGCCAACGTCGACGCTG
AGGTCGCCGAGGCTGAGAAGATGCCCGTCCCCGACAACACTGCCCGCAAC
CTCTTCGAGGACATCTACGTCCGTGGCTCTGAGCCCAAGTGGATGCGTGG
TCGTACCGTCGATGAGACTTTCTACTACTAGATTGTTTCGCCCTATGGGC
ACTTTGTGCATCATGGAAGGGCTCTTATCGTTG
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