FC932614

Overview
NameFC932614
Unique NameFC932614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.253e-60
Identity = 125/204 (61.27%), Postives = 136/204 (66.67%), Query Frame = 3
Query:   81 MSLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS 689
            MSLTIP NL   +L PRSN  L+ +   S     C                   ++AF             P PAVADISGLTPCK+SKQFAKR              Y P+ APALA+ A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAG IGWVGRSYLIAISGEKKPAMKEIIIDVPLAS
Sbjct:    1 MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSAAVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS 194          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 9.783e-59
Identity = 123/204 (60.29%), Postives = 130/204 (63.73%), Query Frame = 3
Query:   81 MSLTIPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS 689
            MS TIPTNL KPL  KP+  S  S A  SK +                        A              P  A+ADI+GLTPCKESKQFAKR              Y  D APALA+KATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAG IGWVGRSYLIAI  EKKP  KEIIIDVPLAS
Sbjct:    1 MSFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLAS 204          

HSP 2 Score: 23.483 bits (49), Expect = 9.783e-59
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  707 FSWPVAAYK 733
            FSWPVAAY+
Sbjct:  211 FSWPVAAYR 219          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.159e-56
Identity = 119/205 (58.05%), Postives = 129/205 (62.93%), Query Frame = 3
Query:   81 MSLTIPTNLSKPL--LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS 689
            MS TI T+  +PL     +S+   S +K++   I C                   L A                PA ADISGLTPCKESKQFAKR              Y PD APALA+KATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAG IGWVGRSYLIAI  EKKP  KEIIIDVPLA+
Sbjct:    1 MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLAT 205          

HSP 2 Score: 23.483 bits (49), Expect = 1.159e-56
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 2
Query:  707 FSWPVAAYK 733
            FSWPVAAY+
Sbjct:  212 FSWPVAAYR 220          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.781e-54
Identity = 101/133 (75.94%), Postives = 112/133 (84.21%), Query Frame = 3
Query:  291 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS 689
            P PA ADI+GLTPCKESK FAKR              Y PD APALA++AT++KTKRRF+NYGK+GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAG IGWVGRSYLIA+SGEKKPAM+EIIIDV LA+
Sbjct:   72 PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAA 204          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.673e-34
Identity = 77/137 (56.20%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  291 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLI----VSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLAS 689
            P  A+ADI+GLTPC ESK +AK               Y  D APA+A+KATME+TK RF NY K GLLCG+DGLPHLI    ++    H GE   P   FLY+AG IG+VGR YLIA+ GE KP  KEIIIDVPLA+
Sbjct:   57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLAT 193          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.916e-32
Identity = 69/132 (52.27%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  291 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLA 686
            P  + AD++GL PCK SK+F +R              Y P+  P LA++  + KTK RF  YG  GLLCG+DGLPHLI  G   H GEF+ PGL FLYIAG IGWVGR+Y+   S   KP  KEIIIDVP+A
Sbjct:   17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVA 148          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.268e-32
Identity = 69/132 (52.27%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  291 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLA 686
            P  A A+++GL PCK+S  F KR              Y  D  PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI G IGWVGR YL++++   KP  KEII+DVPLA
Sbjct:   15 PIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLA 146          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.766e-31
Identity = 66/131 (50.38%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  294 QPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLA 686
            +P  AD++GL PC +S  F +R              Y P  APA A++  ++KT++RFD Y   GLLCG+DGLPHLI  G   H GEF  PGLLFLYIAG IGW GRSYL A++       KEIIID+P+A
Sbjct:   21 RPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVA 151          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.613e-31
Identity = 66/127 (51.97%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  306 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLA 686
            A+++GL PCK+S  F KR              Y  +  PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI G IGWVGR YL++++   KP  KEII+DVPLA
Sbjct:   24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLA 150          
BLAST of FC932614 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.899e-30
Identity = 67/132 (50.76%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  291 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYTPDGAPALAVKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGLIGWVGRSYLIAISGEKKPAMKEIIIDVPLA 686
            P  A+ADI GLT C ES  F KR              Y     PALA++  +E+T+ RFD Y +  LLCG+DGLPHLI  G   H  EFI PG  F+YI+G IGWVGR YL A+S  K P   EIII+VPLA
Sbjct:   19 PNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLA 150          
The following BLAST results are available for this feature:
BLAST of FC932614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ARATH8.253e-6061.27Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL9.783e-5960.29Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR1.159e-5658.05Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU1.781e-5475.94Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE2.673e-3456.20Photosystem I reaction center subunit III, chlorop... [more]
PSAF_GUITH1.916e-3252.27Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORYE4.268e-3252.27Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_CYAPA2.766e-3150.38Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_PORPU3.613e-3151.97Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_ODOSI8.899e-3050.76Photosystem I reaction center subunit III OS=Odont... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34210E06EF PostHarveN Citrus clementina cDNA clone C34210E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932614 ID=FC932614; Name=FC932614; organism=Citrus clementina; type=EST; length=740bp
GATTTCACGTCCATCTCCGCTTCTCCATTAGACACTCACACACACTCACC
CTGAAAGAAAAGAAGAAAAGGAAAAAGAAGATGTCTCTGACAATTCCAAC
AAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCAGTTGAGCC
ATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCTGCTGGTTCT
GAAGAGACTTCCTCTTCTTCTGGCAAGGCCGCCAAGCCGCTCCAGGCTTT
TTCAGCAGCCCTTGCGCTTTCCTCAATTCTGCTATCAGCCCCACAGCCCG
CAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCAAACAATTC
GCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCACTAAAACT
GTACACTCCTGACGGCGCCCCGGCTCTCGCAGTCAAAGCCACCATGGAGA
AGACGAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGCTGTGCGGG
TCAGATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGGCACTGGGG
TGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGGATTGATCG
GGTGGGTTGGCAGGAGCTACTTGATCGCCATTAGCGGTGAAAAGAAGCCG
GCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCAGGTTGGTCTT
CAGAGGTTTAGCTGGCCTGTTGCTGCTTACAAGAGTCGTT
back to top