BG797188

Overview
NameBG797188
Unique NameBG797188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length347
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: AGUA_ARATH (Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.141e-18
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 2
Query:  200 QRVFAKVATAISKFEPVTVCASAAQWENARSQLPENIRVIEMSMNDSWF 346
            QRVFA VA AISKFEPVTVCAS AQWENAR QLPE+IRV+EMSMNDSWF
Sbjct:   44 QRVFADVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVEMSMNDSWF 92          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.230e-18
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:  124 KLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:  123 KLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.813e-17
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = -1
Query:   15 PKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 152
            PKL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:  123 PKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.534e-16
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:  124 KLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.418e-16
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:  123 KLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.465e-16
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:  124 KLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.831e-16
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = -1
Query:   15 PKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 152
            PK+ DLQFFVGESM DD  +VFAYYKEGATDPTFLYIA  LKEVKC
Sbjct:  123 PKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KL DLQFFVGESMHDDG +VFAYYKEGA DPTFLY A  LKEVKC
Sbjct:  124 KLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          
BLAST of BG797188 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.616e-16
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = -1
Query:   15 KLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 149
            KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + ALKE+KC
Sbjct:  123 KLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
The following BLAST results are available for this feature:
BLAST of BG797188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AGUA_ARATH2.141e-1887.76Agmatine deiminase OS=Arabidopsis thaliana GN=AIH ... [more]
TCTP_ELAGV6.230e-1888.89Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ1.063e-1788.89Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA1.813e-1782.61Translationally-controlled tumor protein homolog O... [more]
TCTP_HEVBR1.534e-1688.89Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA3.418e-1684.44Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ4.465e-1684.44Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME5.831e-1682.61Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT7.616e-1684.44Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA7.616e-1682.22Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionCs-5d Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-5d, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG797188 ID=BG797188; Name=BG797188; organism=Citrus sinensis; type=EST; length=347bp
CGAAACCCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAA
AAATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGC
CATCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTC
GGGTACGCAGTCTACGAGACCAGTACTGGTCTCGTAGACTGCGTACCCTC
AAAGGGTATTTGCCAAGGTAGCAACAGCTATTTCAAAGTTTGAACCTGTG
ACTGTCTGTGCTAGTGCTGCTCAGTGGGAGAATGCACGGAGTCAGCTACC
CGAAAATATCAGGGTAATTGAAATGAGCATGAATGATTCCTGGTTTC
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