BG797190

Overview
NameBG797190
Unique NameBG797190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length167
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BG797190 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.968e-19
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 RHDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF 165
            RHD +PALCQRL  IEYLDVAEQCLQALEKISRD+P ACL  GAIMA L++IDFF
Sbjct:  194 RHDTIPALCQRLLTIEYLDVAEQCLQALEKISRDEPVACLNAGAIMAVLSFIDFF 248
[Close]
BLAST of BG797190 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    4 HDAVPALCQRLKAIEYLDVAEQCLQALEKISRDQPHACLEGGAIMAALTYIDFF 165
            + AV  L  RL  IEY+D+AEQ LQAL+KIS++ P ACL  GA+MA L+Y+DFF
Sbjct:  279 YGAVSCLVARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFF 332
The following BLAST results are available for this feature:
BLAST of BG797190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UPL4_ARATH1.968e-1980.00E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
UPL3_ARATH1.973e-1159.26E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCs-13g Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-13g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BG797190 ID=BG797190; Name=BG797190; organism=Citrus sinensis; type=EST; length=167bp
CGACACGATGCAGTTCCTGCTCTTTGTCAAAGATTAAAGGCGATTGAGTA
CTTGGATGTAGCTGAGCAGTGTTTGCAAGCATTGGAGAAAATTTCCCGGG
ATCAACCACATGCTTGCTTAGAGGGTGGGGCTATTATGGCTGCTTTAACT
TATATTGATTTCTTCTC
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