BQ623272

Overview
NameBQ623272
Unique NameBQ623272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623272_ssr50 microsatellite BQ623272_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2047 contig Csv1_Contig2047:395..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623272 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.025e-32
Identity = 66/72 (91.67%), Postives = 67/72 (93.06%), Query Frame = 3 
Query:    3 VEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 218
            VEHVQ SRC EEFKLRKK+ND LKADAKARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   93 VEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
[Close]
BLAST of BQ623272 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.454e-32
Identity = 66/72 (91.67%), Postives = 66/72 (91.67%), Query Frame = 3 
Query:    3 VEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 218
            VEHVQ SRC EEFKLRKKKNDELKA AKA GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   93 VEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164
The following BLAST results are available for this feature:
BLAST of BQ623272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL212_ARATH2.025e-3291.6760S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH3.454e-3291.6760S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00363 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00363 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623272 ID=BQ623272; Name=BQ623272; organism=Citrus sinensis; type=EST; length=390bp
GTGTGGAGCATGTTCAACCTTCAAGGTGTACCGAGGAGTTCAAGCTGAGG
AAGAAGAAGAATGATGAGCTCAAGGCAGATGCTAAGGCAAGAGGTGAGGT
CATCAGTACAAAGAGGCAGCCAAAGGGCCCTAAACCAGGTTTCATGGTGG
AAGGTGCAACATTGGAAACTGTCACTCCTATTCCTTATGATGTCGTCAAT
GATCTTAAGGGTGGTTACTAGGTTATCTTTTTGGTATTGTTGCTGTTTTG
TTACTTGTTGCAGACTTTTCTGGACATGGTCTTATTTGGATGTATTTTCA
TCCTTATTAGTTTTGTTTTTGGAGAGGAACTGCAATTGCAGAGATGTTTA
TTTTTAATCTTCATTTTATATTAGAAACAAGAGATGTTTT
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