BQ623286

Overview
NameBQ623286
Unique NameBQ623286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12372 contig Csv1_Contig12372:549..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 424.476 bits (1090), Expect = 2.609e-118
Identity = 195/227 (85.90%), Postives = 208/227 (91.63%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            YFSWKYSHRRHHSNTGSL+RDEVFVPKQK+ I WY+KYLNNP GRV+TL VTLTLGWPLYLA NVSGRPYDRFACH+DPYGPIYSDRERLQI ISDAG+LA++Y L+ L  AKGL +V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWRE R
Sbjct:  134 YFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREAR 360          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 397.897 bits (1021), Expect = 2.615e-110
Identity = 183/227 (80.62%), Postives = 201/227 (88.55%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            YFSWKYSHRRHHSNTGSL+RDEVFVPKQK+AI WY KYLNNPLGR++ LTV   LGWPLYLAFNVSGRPYD FACHF P  PIY+DRERLQI +SDAGILA+ + LY   AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+RE +
Sbjct:  134 YFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAK 360          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 6.440e-109
Identity = 182/228 (79.82%), Postives = 198/228 (86.84%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPY-DRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            YFSWKYSHRRHHSNTGSL+RDEVFVPK+K+ I WY KYLNNPLGR + LTV  TLGWPLY AFNVSGRPY + FACHF P  PIY+DRERLQI +SDAGILA+ Y LY   AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWRE +
Sbjct:  134 YFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAK 361          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 4.615e-107
Identity = 173/227 (76.21%), Postives = 197/227 (86.78%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            YFSWK SHRRHHSNTGSLDRDEVFVPK K+ + W++KYLNNPLGR ++L VTLT+GWP+YLAFNVSGRPYD FA H+ PY PIYS+RERL I +SD  + ++ YSLY +   KGLV++ C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WRE R
Sbjct:  138 YFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREAR 364          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.266e-80
Identity = 133/227 (58.59%), Postives = 170/227 (74.89%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            YFSWKYSHR HH+NT SLD DEV++PK K  +  Y K LN+P GR++ + +T TLG+PLYL  N+SG+ Y+RFA HFDP  PI+ +RER Q+++SD G+LA++Y +   VAAKG  +V CIYG P+L V  F  +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWRE +
Sbjct:  127 YFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDLGLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAK 353          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.116e-52
Identity = 108/244 (44.26%), Postives = 140/244 (57.38%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            Y SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    IIISD G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  R
Sbjct:  141 YHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFR 384          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.458e-52
Identity = 108/244 (44.26%), Postives = 140/244 (57.38%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK--------------YLNN--PLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREQR 682
            Y SW+ SH +HH  TG + +D+VFVPK ++ +G   K              +L+   P+  +  + +    GWP YL  N SG+ Y R+  HF  Y PI+  R    IIISD G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  R
Sbjct:  141 YHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFR 384          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.913e-36
Identity = 83/217 (38.25%), Postives = 115/217 (53.00%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVP---KQKTAIGWYAKYLNNPLGRVITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SH+ HH N G+++ DE +VP   K    +G+  K+L   +   +       L +P+YL     G+       HF+PY  ++   ER  ++ S      M   L  L  A G + +F IYG P L+   +L  +T L H      LP Y   EW + RG L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY+
Sbjct:  126 YHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPL-------LAYPMYLMKRSPGKS----GSHFNPYSDLFQPHERKYVVTSTLCWTVMAALLLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYR 330          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 84/215 (39.07%), Postives = 115/215 (53.49%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE +VP  +     Y K  ++   R++  TV L  L +PLYL +   G+       HF+PY  +++  ER  I  S      M  SL  L    G + V  +YG P ++   +L  +T L H      LP Y   EW + RG L T+DRDYGI N + H+I  THV HHLF  +PHYH ++ATKA K +LG YY+
Sbjct:  130 YHGWRISHRTHHQNHGHVENDESWVPLPERV---YKKLPHST--RMLRYTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33
Identity = 82/216 (37.96%), Postives = 114/216 (52.78%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLG-RVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE +VP  +        Y N P   R++  TV L  L +P+YL +   G+       HF+PY  +++  ER  I  S      M+ +L  L      V V  +YG P ++   +L  +T L H      LP Y   EW + RG L T+DRDYGI N + H+I  THV HHLF  +PHYH ++AT+A K +LG YY+
Sbjct:  127 YHGWRISHRTHHQNHGHVENDESWVPLPEKL------YKNLPHSTRMLRYTVPLPMLAYPIYLWYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIMLATLVYLSFLVDPVTVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYR 331          
The following BLAST results are available for this feature:
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN2.609e-11885.90Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH2.615e-11080.62Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU6.440e-10979.82Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN4.615e-10776.21Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL1.266e-8058.59Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP1.116e-5244.26Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS1.458e-5244.26Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC1.913e-3638.25Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH8.038e-3539.07Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA4.411e-3337.96Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00377 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00377 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623286 ID=BQ623286; Name=BQ623286; organism=Citrus sinensis; type=EST; length=686bp
CTACTTCTCTTGGAAGTATAGCCATCGCCGCCATCACTCCAATACAGGAT
CCCTTGATCGTGATGAAGTATTTGTCCCCAAGCAAAAAACCGCCATTGGT
TGGTATGCCAAGTACCTTAACAACCCACTTGGCCGAGTCATAACACTTAC
TGTCACCCTCACCCTTGGCTGGCCTTTGTACCTGGCATTCAATGTATCCG
GTAGGCCTTATGATAGATTTGCTTGCCACTTTGATCCTTATGGCCCCATC
TACTCAGACCGCGAGAGGCTCCAAATTATCATTTCTGATGCTGGAATTTT
AGCTATGATTTACAGTCTCTACTGTCTTGTAGCAGCAAAAGGACTTGTGT
ACGTGTTCTGCATCTATGGAGGACCTTTGCTGGTAGTGAACGGATTTCTC
GTTTTGATCACATTGTTGCAGCACACTCACCCTTCACTGCCACATTACCA
TTCTTCAGAATGGGACTGGTTCCGAGGAGCCCTAGCAACTGTTGATAGAG
ACTATGGGATCTTGAACAAGGTCTTCCATAACATTACTGATACTCATGTA
GCTCACCATTTGTTTTCAACAATGCCACATTATCATGCAATGGAGGCTAC
GAAGGCAATAAAGCCAATTTTGGGAGAATATTATCAGTTCGATGGGACTC
CATTTTATAAGGCAATGTGGAGGGAACAAAGGAGTG
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