BQ623532

Overview
NameBQ623532
Unique NameBQ623532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623532_ssr174 microsatellite BQ623532_ssr174:174..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:84..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.460e-44
Identity = 97/159 (61.01%), Postives = 115/159 (72.33%), Query Frame = 2
Query:   83 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAM 535
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AM
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAM 178          

HSP 2 Score: 22.7126 bits (47), Expect = 7.460e-44
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  526 VCYAGPCCFGFTEFVKGGTLV 588
            +   G     FTEFVKG +LV
Sbjct:  176 IAMLGLVALAFTEFVKGTSLV 196          
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.642e-30
Identity = 77/180 (42.78%), Postives = 109/180 (60.56%), Query Frame = 2
Query:   14 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAM 535
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAM 179          

HSP 2 Score: 23.0978 bits (48), Expect = 7.642e-30
Identity = 9/17 (52.94%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  538 GPCCFGFTEFVKGGTLV 588
            G     FTE+VKGG L+
Sbjct:  181 GLVALAFTEYVKGGPLI 197          
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.171e-27
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  230 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAM 535
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAM 147          
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.754e-27
Identity = 76/171 (44.44%), Postives = 99/171 (57.89%), Query Frame = 2
Query:   26 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAM 535
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAM 152          
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 2
Query:  203 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAM 535
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAM
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAM 211          
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 57/114 (50.00%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  206 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAM 535
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGRFAM
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAM 154          
The following BLAST results are available for this feature:
BLAST of BQ623532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA7.460e-4461.01Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL7.642e-3042.78Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU5.171e-2757.28Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU6.754e-2744.44Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU1.505e-2655.75High molecular mass early light-inducible protein ... [more]
CBR_DUNBA5.364e-1650.00Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00623 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00623 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623532 ID=BQ623532; Name=BQ623532; organism=Citrus sinensis; type=EST; length=626bp
TCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGCAA
GTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCAA
CTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATC
CGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGATC
AACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGATG
AGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCGGCACCGGAGAG
GATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGG
AGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGTT
GCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTCC
TTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTT
CGGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGCTGGGCCTTGTTGCT
TTGGCTTTACCGAGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTTAATTT
TGTTTAGATCTGTAAATCTGAATTTT
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