BQ623543

Overview
NameBQ623543
Unique NameBQ623543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.390e-43
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 386
            M+L KA+E VS N V VFSKT+CPFCVSVK+L  +LG TFKA+EL+ E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:    1 MSLAKAKEIVSGNPVAVFSKTYCPFCVSVKDLLSKLGATFKAVELDSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.090e-42
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 374
            MA+ KAQE VSSNSVVVFSKTFCP+C SVK+L  QLG  FK IEL+ ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:    1 MAMIKAQELVSSNSVVVFSKTFCPYCTSVKQLLNQLGAQFKVIELDSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.205e-41
Identity = 81/106 (76.42%), Postives = 95/106 (89.62%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 386
            MAL KA+ETV+S  VVV+SK++CPFCV VK+LF+QLG TFKAIEL+ ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:    1 MALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKAIELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.579e-41
Identity = 81/107 (75.70%), Postives = 94/107 (87.85%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 386
            MA+ KA+E V+S SVVVFSKT+CP+CV VKEL QQLG  FKA+EL+ ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:    1 MAMQKAKEIVNSESVVVFSKTYCPYCVRVKELLQQLGAKFKAVELDTESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.612e-40
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = 3
Query:   69 MALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 374
            MA+ K +E VSSN+VVVFSKT+CP+C SVK+L  QLG  +K +EL+ ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:    1 MAMTKTKELVSSNAVVVFSKTYCPYCTSVKKLLDQLGAKYKVVELDTESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.565e-36
Identity = 70/112 (62.50%), Postives = 90/112 (80.36%), Query Frame = 3
Query:   42 RIKDKEDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 377
            ++++     MAL KA+E V+S+ VVVFSKT+CPFC  VK L  +L  ++KA+EL+ ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   18 QLEEPSKPVMALDKAKEIVASSPVVVFSKTYCPFCARVKRLLAELAASYKAVELDVESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.081e-34
Identity = 68/112 (60.71%), Postives = 87/112 (77.68%), Query Frame = 3
Query:   54 KEDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 389
            KE+ E+ + KA+E VS+  VVVFSKT+C +C  VK+L  QLG TFK +EL++ SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   12 KEEMEVVVNKAKEIVSAYPVVVFSKTYCGYCQRVKQLLTQLGATFKVLELDEMSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.008e-25
Identity = 51/98 (52.04%), Postives = 74/98 (75.51%), Query Frame = 3
Query:   75 LPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 368
            + K +  + ++ +++FSKT CP+C+SVK+LF++L V    +EL+ ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:    1 MDKVKALIKAHKLIIFSKTTCPYCISVKDLFKKLKVVPFVVELDLESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.531e-20
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   57 EDTEMALPKAQETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 356
            + T   + + QET+S+N VV+FSKT C +C   K++F  + V +KA+EL+    G+  Q AL + TG++TVP +F+ G+ IGG   T  LH+EGKL+PL+
Sbjct:   44 KSTTTPVNQIQETISNNCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLPLV 143          
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Match: GLRX2_BOVIN (Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.612e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 3
Query:   87 QETVSSNSVVVFSKTFCPFCVSVKELFQQLGVTFKAIELNKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 356
            QET+S+N VV+FSKT C +C   K LF  + V +K +EL+    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   55 QETISNNCVVIFSKTSCSYCTMAKNLFHDMNVNYKVVELDMLEYGSQFQDALHKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 144          
The following BLAST results are available for this feature:
BLAST of BQ623543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GLRX_SOLLC6.390e-4376.42Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO1.090e-4279.41Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ1.205e-4176.42Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ARATH4.579e-4175.70Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GLRX_RICCO6.612e-4074.51Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC4_ORYSJ7.565e-3662.50Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH7.081e-3460.71Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI6.008e-2552.04Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GLRX2_MOUSE1.531e-2044.00Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GLRX2_BOVIN2.612e-2048.89Glutaredoxin-2, mitochondrial OS=Bos taurus GN=GLR... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00634 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00634 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623543 ID=BQ623543; Name=BQ623543; organism=Citrus sinensis; type=EST; length=536bp
GCCAAAGAGGATTTGAAGCTTATTTAGGGTTTGTGAGATTTCGAATCAAA
GACAAAGAAGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGTTTC
CTCCAATTCCGTCGTCGTTTTCAGCAAAACGTTTTGTCCGTTCTGCGTGA
GTGTCAAAGAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATTGAA
CTGAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTG
GACTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTG
GTGGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCT
CTGCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTGATGGATGGC
TATTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTAGTG
CTTAATCTGTCTGAATTAAACATGAAATTATGCTTATTTTGAGTAATTTC
CCAATGCACTTTTTTGTTCAAAAAAAAAAAAAAAAA
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