BQ623629

Overview
NameBQ623629
Unique NameBQ623629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Match: HDHD3_BOVIN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Bos taurus GN=HDHD3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   64 EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 402
            E+LY  +++   W + +  AE   +  RK G+KLAVVSNFD RL  +L  +     FD           KP+P IF +A  L  V+P    H+GD  + D  GAR  G  ++L
Sbjct:   99 EQLYKDFSSPSTWQVLEG-AEATLRGCRKRGLKLAVVSNFDRRLEDILEGVGLREHFDFVLTSEAAGWPKPDPRIFHEALHLAQVEPAVGAHIGDSYQRDYKGARAVGMHSFL 210          
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Match: HDHD3_XENLA (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 48/140 (34.29%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    4 RPFWQFIVSSS---TGCSDSQYFE----ELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 402
            R +W  +V  +   +G  DS   +    +LY  ++T   W L  P A +   +    G+++AV+SNFD RL  +LR    + +FD           KP+  IF KA  L  V P  AVHVGDD  ND   AR  G  ++L
Sbjct:   68 RQWWLDVVLQTFRLSGIEDSDTVQSLAKQLYQDFSTAHNWALV-PGAREALDSCTNLGLRMAVISNFDRRLEELLRQCCLERYFDFVVTAESAGVAKPHLGIFHKALSLAKVPPHQAVHVGDDYVNDYCAARMVGMHSYL 206          
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Match: HDHD3_MOUSE (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.157e-12
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 1
Query:    4 RPFWQFIVSSS---TGCSDSQYF----EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 402
            R +W+ +V  +    G  D+Q      ++LY  +++   W + +  AE   K  RK G+KLAVVSNFD RL  +L  L     FD           KP+P IF +A     V+P  A HVGD    D  G++  G  ++L
Sbjct:   72 RQWWKDVVLHTFRLAGVPDAQAMTPVADQLYEDFSSPFTWQVLEG-AEMTLKGCRKRGLKLAVVSNFDRRLEDILTGLGLREHFDFVLTSEAVGCPKPDPRIFREALQRACVEPAVAAHVGDSYLCDYQGSQAVGMHSFL 210          
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Match: NANP_RAT (N-acylneuraminate-9-phosphatase OS=Rattus norvegicus GN=Nanp PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.198e-12
Identity = 41/133 (30.83%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   13 WQFIVSSSTGCSDSQYF-EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRL-RPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 405
            W+  +  + G +D++   EE Y  + + +  H+   E  K      +  V+L +++N D +  R  + A  C  +FD           KP P+IF   CDLLGV+P D V VGD    D+ G  +AG  A +W
Sbjct:   76 WEEAIQETKGGADNRKLAEECYFLWKSTRLQHMTLEEDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVVGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVW 208          
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Match: NANP_MOUSE (N-acylneuraminate-9-phosphatase OS=Mus musculus GN=Nanp PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 40/133 (30.08%), Postives = 64/133 (48.12%), Query Frame = 1
Query:   13 WQFIVSSSTGCSDSQYF-EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRL-RPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWLW 405
            W+  +  + G +D++   EE Y  + + +  H+   +  K      +  V+L +++N D +  R  + A  C  +FD           KP P+IF   CDLLGV+P D V VGD    D+ G  +AG  A +W
Sbjct:   76 WEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVW 208          
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Match: HDHD3_HUMAN (Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Homo sapiens GN=HDHD3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = 1
Query:    4 RPFWQFIVSSS---TGCSDSQYF----EELYNYYTTEKAWHLCDPEAEKVFKAIRKAGVKLAVVSNFDTRLRPVLRALNCDHWFDXXXXXXXXXXXKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDVWGARDAGCDAWL 402
            R +W  +V  +    G  D+Q      E+LY  ++    W + D  AE   +  R  G++LAV+SNFD RL  +L  L     FD           KP+P IF +A  L  ++P  A HVGD+   D  G R  G  ++L
Sbjct:   72 RQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDG-AEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFL 210          
The following BLAST results are available for this feature:
BLAST of BQ623629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HDHD3_BOVIN1.951e-1336.28Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_XENLA5.677e-1334.29Haloacid dehalogenase-like hydrolase domain-contai... [more]
HDHD3_MOUSE2.157e-1233.57Haloacid dehalogenase-like hydrolase domain-contai... [more]
NANP_RAT8.198e-1230.83N-acylneuraminate-9-phosphatase OS=Rattus norvegic... [more]
NANP_MOUSE1.826e-1130.08N-acylneuraminate-9-phosphatase OS=Mus musculus GN... [more]
HDHD3_HUMAN3.115e-1132.86Haloacid dehalogenase-like hydrolase domain-contai... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00720 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00720 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623629 ID=BQ623629; Name=BQ623629; organism=Citrus sinensis; type=EST; length=447bp
GGGAGACCCTTCTGGCAATTTATAGTTAGTTCGTCGACTGGTTGTTCAGA
TTCCCAGTATTTTGAAGAACTTTATAACTACTATACCACTGAAAAGGCAT
GGCACCTCTGTGATCCTGAAGCTGAAAAGGTATTTAAGGCTATCAGAAAA
GCAGGAGTCAAATTGGCTGTTGTGTCAAACTTTGATACTCGGTTAAGACC
TGTGTTGCGAGCTCTAAATTGTGATCATTGGTTCGATGCTGTTGCAGTGT
CAGCTGAAGTTGAAGCAGAGAAGCCAAATCCAACAATATTCCTAAAAGCC
TGTGATTTGTTGGGAGTAAAACCTGAGGATGCTGTACATGTAGGGGATGA
TCGTAGGAATGATGTGTGGGGTGCCAGGGATGCAGGTTGTGATGCTTGGC
TTTGGGGAAGTGATGTCCACTCCTTTAAGGAGGTTGCTCAAAGGATA
back to top