BQ623636

Overview
NameBQ623636
Unique NameBQ623636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623636_ssr332 microsatellite BQ623636_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.803e-34
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 2
Query:   23 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            A AITCGQVT SLAPCI Y+RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C+
Sbjct:   22 AHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCA 112          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.223e-32
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 2
Query:   23 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            AQAITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C+
Sbjct:   24 AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCA 114          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 4.648e-32
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 2
Query:   32 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            ITCGQV+ SLAPCI Y+R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCA 88          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.352e-31
Identity = 58/88 (65.91%), Postives = 70/88 (79.55%), Query Frame = 2
Query:   32 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            ITCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCA 88          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.766e-31
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 2
Query:   23 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            AQA+TCGQV+ +LAPCI Y+R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNA  LP  CGV++PYKIS ST+C+
Sbjct:   24 AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 8.767e-31
Identity = 63/87 (72.41%), Postives = 68/87 (78.16%), Query Frame = 2
Query:   32 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDC 292
            ITCGQV+ SLAPCI YLR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LN N A GLP  CGVS+PYKIS STDC
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDC 87          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.145e-30
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 2
Query:    2 LVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSK 298
            +V G    +A++CGQV+ SLAPCI YL  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NA   P  CGVSIPYKIS STDCSK
Sbjct:   16 MVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSK 114          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.145e-30
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 2
Query:   32 ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            ITCGQV+ +LAPCI Y++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCA 88          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.495e-30
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 2
Query:   23 AQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            A AITC QV+ +LAPCI Y+RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  AGS+  +NP NA  LP  CGV++PYKIS ST+C+
Sbjct:   22 AHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCA 112          
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.683e-29
Identity = 62/99 (62.63%), Postives = 73/99 (73.74%), Query Frame = 2
Query:    2 LVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP-CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCS 295
            +V  P++  AI+CG VT  L+PC+ YL +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C+
Sbjct:    9 VVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCN 106          
The following BLAST results are available for this feature:
BLAST of BQ623636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO3.803e-3470.33Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU1.223e-3265.93Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_PRUAR4.648e-3268.18Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUPE1.352e-3165.91Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PRUAV1.766e-3162.64Non-specific lipid-transfer protein OS=Prunus aviu... [more]
LTP1_MORNI8.767e-3172.41Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN1.145e-3061.62Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDO1.145e-3063.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_PYRCO1.495e-3061.54Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP4_LENCU3.683e-2962.63Non-specific lipid-transfer protein 4 (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00727 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00727 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623636 ID=BQ623636; Name=BQ623636; organism=Citrus sinensis; type=EST; length=468bp
GTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTGA
CTGGCTCATTGGCACCATGCATCGTTTACTTGAGATCGGGCGGCCCTATA
CCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAAC
CACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGAT
CAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGT
GGAGTCAGCATTCCTTACAAGATCAGCATCTCCACTGACTGCTCTAAGTA
TATATGTCTTCAACTTCAATTAAATCTCCACATTATTATTATTTTTCTTT
TTCAATTTTCAATTTTTTTTTACTCACTTTTGTTTTATTGTGTTTCAGGG
TCCGGTGAACAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGA
GTAGAATAATGTATAATA
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