BQ623656

Overview
NameBQ623656
Unique NameBQ623656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_CUCSA (Photosystem I reaction center subunit XI, chloroplastic OS=Cucumis sativus GN=PSAL PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 4.302e-77
Identity = 143/203 (70.44%), Postives = 163/203 (80.30%), Query Frame = 1
Query:    4 ASQLKSSFTSPVSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            ASQL SSF S  +R+L++P+G+S SP R +P+ R+  F ++AIQ++KPT+QVIQPINGDPFIGSLETP+TSSPLIAWYLSNLPAYRTAVSPLLRG+EVGLAHGF LVGPFVKAGPLRNT              +VILS+CLT+YG+ASFNEGEPSTAP LTLTGRKK PD LQTADGWAK         ISGVIWAYFLL  L
Sbjct:    9 ASQLSSSFASSNTRALISPKGLSASPLRRIPT-RTHSFTIRAIQADKPTFQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAGPLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQTADGWAKFSGGFFFGGISGVIWAYFLLYVL 210          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_ARATH (Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 6.213e-76
Identity = 144/205 (70.24%), Postives = 162/205 (79.02%), Query Frame = 1
Query:    1 MASQLKSSFTSP-VSRSLLTPRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            MASQL+SSF+S  +S+ L  P+GISG+PF V P+KR   F V+A++S+K T+QV+QPINGDPFIGSLETP+TSSPLIAWYLSNLP YRTAV+PLLRGVEVGLAHGF LVGPFVKAGPLRNT              VVILS+CLTIYGI+SF EGEPS AP LTLTGRKK+PDQLQTADGWAK         ISGV WAYFLL  L
Sbjct:    8 MASQLRSSFSSASLSQRLAVPKGISGAPFGVSPTKRVSSFTVRAVKSDKTTFQVVQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVKAGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQLQTADGWAKFTGGFFFGGISGVTWAYFLLYVL 212          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_SPIOL (Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.692e-73
Identity = 142/205 (69.27%), Postives = 160/205 (78.05%), Query Frame = 1
Query:    1 MASQLKSSFTSPVSRSLLTPRGISGSPFRVVPS-KRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            MASQLKS FT+   ++L+ P+GISG   R  PS +R   F V+AI++EKPTYQVIQP+NGDPFIG LETP+TSSPLIAWYLSNLPAYRTAV+PLLRGVEVGLAHGFLLVGPFVKAGPLRNTE             VVILS+CLT+YGIASF EGEPS AP LTLTGRKK+PDQLQ+ADGWAK         +SGV WA FL+  L
Sbjct:    8 MASQLKSGFTT---KALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPLNGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSADGWAKFTGGFFFGGVSGVTWACFLMYVL 209          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_HORVU (Photosystem I reaction center subunit XI, chloroplastic OS=Hordeum vulgare GN=PSAL PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.651e-68
Identity = 130/207 (62.80%), Postives = 153/207 (73.91%), Query Frame = 1
Query:    1 MASQLKSSFTSPVSRSLLT---PRGISGSPFRVVPSKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSL 612
            MA+       S V +S L    PRG+SG+        R PRF+VKA++S+KPTYQV+QPINGDPFIGSLETP+TSSPL+AWYLSNLPAYRTAVSPLLRG+EVGLAHG+LLVGPF   GPLRNT +            V ILS+CLT+YG+ASFNEGEPSTAP LTLTGRKKE D+LQTA+GW++         +SG +WAYFLL  L
Sbjct:    1 MATAYAPPMASQVMKSGLACSKPRGMSGASLT-----RRPRFVVKAVKSDKPTYQVVQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFALTGPLRNTPVHGQAGTLGAIGLVSILSVCLTMYGVASFNEGEPSTAPVLTLTGRKKEADKLQTAEGWSQFTGGFFFGGVSGAVWAYFLLYVL 202          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_GUITH (Photosystem I reaction center subunit XI OS=Guillardia theta GN=psaL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  154 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTFL 621
            Q ++P N DPF+G+L TPIT+S      LSNLPAYR  +SPLLRG+E+G+ HG+ LVGPF K GPLRN+E+            ++I++ CL IYG+ SFN  +                +QLQ+A GW +         I G  +AY L+ +++FL
Sbjct:    3 QFVKPYNDDPFVGNLATPITTSSFTRTLLSNLPAYRAGLSPLLRGLEIGMTHGYFLVGPFYKLGPLRNSEVALLAGVFSALGLIIIMAACLAIYGVVSFNTNDGG--------------EQLQSAKGWRQFTSGWLVGSIGGASFAYILIANVSFL 144          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_CYACA (Photosystem I reaction center subunit XI OS=Cyanidium caldarium GN=psaL PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.165e-28
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  160 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 603
            I+P   +PF+G+L TP+ SS +  WYL NLP YR  +SPLLRG+E+G+AHG+ ++GPF K GPLRNT++            ++I SI + IYGI +F+  E +              D+LQTA+GW +         + G  +AY LL
Sbjct:    5 IKPYGSNPFVGNLSTPVNSSKVTIWYLKNLPIYRRGLSPLLRGLEIGMAHGYFIIGPFYKLGPLRNTDLSLLSGLIAAIGLIIISSIAMIIYGIVTFDNSENN--------------DKLQTANGWRQLASGFLLGAVGGAGFAYILL 138          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_GRATL (Photosystem I reaction center subunit XI OS=Gracilaria tenuistipitata var. liui GN=psaL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.833e-27
Identity = 61/154 (39.61%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  160 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTFL 621
            IQ  N DPF+G+L TP+++S      L+NLPAYR  +SPLLRG+E+G+AHG+ LVGPF K GPLRNT++            ++IL++CL++YG  SF++ +                D LQT +GW +         + G  +AY LL ++  L
Sbjct:    5 IQSYNNDPFLGNLSTPVSTSTFTKGLLNNLPAYRRGLSPLLRGLEIGMAHGYFLVGPFDKLGPLRNTDVALLSGFLSAVGLIIILTVCLSMYGNVSFDKDDAK--------------DLLQTTEGWGQFTAGFLVGAVGGSGFAYLLLANIPVL 144          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_THEEB (Photosystem I reaction center subunit XI OS=Thermosynechococcus elongatus (strain BP-1) GN=psaL PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.394e-27
Identity = 56/150 (37.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  154 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 603
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+             D L+T++GW++         +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILRGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_PORPU (Photosystem I reaction center subunit XI OS=Porphyra purpurea GN=psaL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.126e-27
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  154 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLMSLTFL 621
            + I+P N DPF+G+L TP+++S      L NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF               R    D LQTA+GW +         + G  +AY LL ++  L
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGLLGNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RSDSKDPLQTAEGWGQFTAGFLVGAVGGSGFAYLLLANIPVL 144          
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Match: PSAL_SYNEN (Photosystem I reaction center subunit XI OS=Synechococcus elongatus naegeli GN=psaL PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.552e-26
Identity = 55/150 (36.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  154 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 603
            ++++P NGDPF+G L TPI+ S L+  ++ NLPAYR  +SP+L G+EVG+AHG+ L+GP+VK GPLR++++            +++ + CL  YG+ SF +G  S+             D L+T++GW++         +     A+FLL
Sbjct:    4 ELVKPYNGDPFVGHLSTPISDSGLVKTFIGNLPAYRQGLSPILPGLEVGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILVATACLAAYGLVSFQKGGSSS-------------DPLKTSEGWSQFTAGFFVGAMGSAFVAFFLL 140          
The following BLAST results are available for this feature:
BLAST of BQ623656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_CUCSA4.302e-7770.44Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_ARATH6.213e-7670.24Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_SPIOL1.692e-7369.27Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_HORVU3.651e-6862.80Photosystem I reaction center subunit XI, chloropl... [more]
PSAL_GUITH1.356e-3041.67Photosystem I reaction center subunit XI OS=Guilla... [more]
PSAL_CYACA2.165e-2840.54Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_GRATL1.833e-2739.61Photosystem I reaction center subunit XI OS=Gracil... [more]
PSAL_THEEB2.394e-2737.33Photosystem I reaction center subunit XI OS=Thermo... [more]
PSAL_PORPU3.126e-2739.10Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_SYNEN1.552e-2636.67Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00747 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00747 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623656 ID=BQ623656; Name=BQ623656; organism=Citrus sinensis; type=EST; length=633bp
ATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTCCAGGAGCCT
GCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCCA
AGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAAAAGCCAACT
TACCAAGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGA
GACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTAC
CAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGG
TTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATT
GAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCC
TTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTC
AATGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAA
GAAGGAGCCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTG
GAGGATTCTTCTTTGGTGGAATTTCTGGGGTCATTTGGGCTTATTTCCTG
CTTATGTCCTTAACCTTCTTACTTCGTTAAATA
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