BQ623672

Overview
NameBQ623672
Unique NameBQ623672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:590..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.486e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 53.5286 bits (127), Expect = 1.486e-46
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYP 190
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.525e-46
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 54.6842 bits (130), Expect = 2.525e-46
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  156 VLMGAVEGYRIAGGPLGEVTDPIYP 180
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.533e-46
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 54.6842 bits (130), Expect = 2.533e-46
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  107 VLMGAVEGYRIAGGPLGEVTDPIYP 131
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.289e-46
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 53.5286 bits (127), Expect = 3.289e-46
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  162 VLMGAVEGYRIAGGPLGEVVDPLYP 186
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.484e-46
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 54.299 bits (129), Expect = 9.484e-46
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGAVEGYRIAGGPLGEVTDP+YP
Sbjct:  175 ILMGAVEGYRIAGGPLGEVTDPIYP 199
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.486e-46
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 53.1434 bits (126), Expect = 9.486e-46
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.486e-46
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 53.5286 bits (127), Expect = 9.486e-46
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYRIAGGPLGEV DPLYP
Sbjct:  168 VLMGAVEGYRIAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 9.486e-46
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 54.6842 bits (130), Expect = 9.486e-46
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGA+EGYR+AGGPLGEVTDPLYP
Sbjct:  168 VLMGAIEGYRVAGGPLGEVTDPLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.236e-45
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 2 
Query:   83 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 53.1434 bits (126), Expect = 1.236e-45
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            VLMGAVEGYR+AGGPLGEV DPLYP
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLYP 192
[Close]
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.611e-45
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 2 
Query:   86 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 301
            FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 53.5286 bits (127), Expect = 1.611e-45
Identity = 21/25 (84.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:    1 VLMGAVEGYRIAGGPLGEVTDPLYP 75
            +LMGA+EGYR+AGGPLGEVTDP+YP
Sbjct:  179 ILMGAIEGYRVAGGPLGEVTDPIYP 203
The following BLAST results are available for this feature:
BLAST of BQ623672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_ORYSJ1.486e-46100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA2.525e-4697.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA2.533e-4697.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_ORYSJ3.289e-4698.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY9.484e-4695.89Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP9.486e-4697.26Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC9.486e-4697.26Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC9.486e-4695.89Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC1.236e-4597.26Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2A_PINSY1.611e-4597.22Chlorophyll a-b binding protein type 2 member 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00763 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00763 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623672 ID=BQ623672; Name=BQ623672; organism=Citrus sinensis; type=EST; length=411bp
GTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGG
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCATTTGATCCATTGGGT
TTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAA
GAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCA
TTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGAC
CCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAA
GTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCA
TGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATT
TATAAATGCTT
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