BQ623720

Overview
NameBQ623720
Unique NameBQ623720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2345 contig Csv1_Contig2345:182..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.356e-62
Identity = 106/135 (78.52%), Postives = 114/135 (84.44%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHG PEDENRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   18 IFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 34.2686 bits (77), Expect = 1.356e-62
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVLG +EGVKGT F
Sbjct:    1 MVKAVAVLGSSEGVKGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.306e-62
Identity = 107/135 (79.26%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHG PEDE RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 IYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 33.113 bits (74), Expect = 2.306e-62
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVLG +EGVKGT +
Sbjct:    1 MVKAVAVLGSSEGVKGTIY 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 1.133e-61
Identity = 105/135 (77.78%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEGDGPT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHG PEDENRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   18 IFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 33.113 bits (74), Expect = 1.133e-61
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVLG ++GVKGT F
Sbjct:    1 MVKAVAVLGSSDGVKGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 1.478e-61
Identity = 105/135 (77.78%), Postives = 117/135 (86.67%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            V F+QEG GPTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG PEDE RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK TGNAGGRVACG+IGLQG
Sbjct:   18 VQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152          

HSP 2 Score: 26.5646 bits (57), Expect = 1.478e-61
Identity = 12/17 (70.59%), Postives = 13/17 (76.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGT 55
            MVKAV VL  +EGV GT
Sbjct:    1 MVKAVVVLSSSEGVSGT 17          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.927e-61
Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + FSQEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG P D+NRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:   18 IFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 30.0314 bits (66), Expect = 1.927e-61
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL  +EGV GT F
Sbjct:    1 MVKAVAVLSSSEGVSGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.512e-61
Identity = 106/135 (78.52%), Postives = 116/135 (85.93%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+QEGDGPTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHG P+DE RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSKTTGN GGRVACGI GLQG
Sbjct:   18 IYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152          

HSP 2 Score: 27.335 bits (59), Expect = 2.512e-61
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVK VAVL  +EGV GT +
Sbjct:    1 MVKGVAVLSSSEGVSGTIY 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 7.262e-61
Identity = 105/135 (77.78%), Postives = 115/135 (85.19%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + F+Q+GD PTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NPAGKEHG PEDE RHA            TA+FT+ D QIPL+GP SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 IFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 30.0314 bits (66), Expect = 7.262e-61
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL  +EGV GT F
Sbjct:    1 MVKAVAVLSSSEGVSGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.235e-60
Identity = 106/135 (78.52%), Postives = 118/135 (87.41%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            V F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHG PED+ RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 VYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 24.6386 bits (52), Expect = 1.235e-60
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            M KAV VL  +EGV GT +
Sbjct:    1 MGKAVVVLSSSEGVSGTVY 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.235e-60
Identity = 105/135 (77.78%), Postives = 113/135 (83.70%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 461
            + FSQEGDGPT+V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNP GKEHG P+DENRHA             A   V D+QIPL+G +SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   18 IFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          

HSP 2 Score: 31.9574 bits (71), Expect = 1.235e-60
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL  +EGVKGT F
Sbjct:    1 MVKAVAVLASSEGVKGTIF 19          
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.099e-60
Identity = 103/134 (76.87%), Postives = 113/134 (84.33%), Query Frame = 3
Query:   57 VSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 458
            V F+QEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHG PED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSKTTGNAGGR+ACG+IGLQ
Sbjct:   18 VFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          

HSP 2 Score: 31.9574 bits (71), Expect = 2.099e-60
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2
Query:    5 MVKAVAVLGGTEGVKGTCF 61
            MVKAVAVL G+EGV+GT F
Sbjct:    1 MVKAVAVLTGSEGVQGTVF 19          
The following BLAST results are available for this feature:
BLAST of BQ623720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC4_MAIZE1.356e-6278.52Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_ANACO2.306e-6279.26Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC5_MAIZE1.133e-6177.78Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC1_MESCR1.478e-6177.78Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC_IPOBA1.927e-6177.78Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_PAUKA2.512e-6178.52Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_NICPL7.262e-6177.78Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC_SPIOL1.235e-6078.52Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC2_ORYSJ1.235e-6077.78Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_ZANAE2.099e-6076.87Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00811 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00811 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623720 ID=BQ623720; Name=BQ623720; organism=Citrus sinensis; type=EST; length=601bp
CACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGG
GAACCTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGG
AAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTC
TTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCT
GCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGA
CTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTG
TTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCT
GTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCT
GAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTG
GCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGA
TATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTT
CAAGACTATGATCTTGATAAGAAAAATCTAAACTTTGTTGGGTTGTTGAA
T
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