BQ623723

Overview
NameBQ623723
Unique NameBQ623723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.589e-30
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 2
Query:    2 DFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 238
            DFLRLINEPV+G E N+ +QL   MPQ++ VTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  300 DFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.996e-29
Identity = 67/83 (80.72%), Postives = 73/83 (87.95%), Query Frame = 2
Query:    2 DFLRLINEPVQGG--EGNLGDQLAGLMPQ--SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 238
            DFLRLINEPV+GG   GNL  Q+A  MPQ  +IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  337 DFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.178e-25
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 DFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 238
            +FL LINEP +G  E NL DQ    MPQ+I VTPEE EAI RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  309 EFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 DFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 238
            +FL+L+NEP +G +G++   DQ    MP S+ VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H  +FED
Sbjct:  288 EFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 4.633e-22
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 DFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 238
            +FL+L+NEP +G  GEG++ DQ    MP +I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++  +FED
Sbjct:  291 EFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.066e-14
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 FLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 214
            F++++NEPVQ          GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  324 FIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 FLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 214
            F++++NEPVQ          GG G + +   G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  323 FIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.932e-13
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 FLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 238
            FL+L+ E   G EG       G+    IQ+T EE E+I+RL  +GFDR IV++ + AC+KNEELAANYL +H HE ED
Sbjct:  295 FLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.135e-13
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 2
Query:    5 FLRLINEPVQ----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 214
            F++++NEPVQ                GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  324 FIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.706e-13
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 2
Query:    5 FLRLINEPVQ-----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 214
            F++++NEPVQ                 GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  324 FIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
The following BLAST results are available for this feature:
BLAST of BQ623723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RD23D_ARATH1.589e-3082.28Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.996e-2980.72Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ1.178e-2572.50Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH1.593e-2261.73Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH4.633e-2261.73Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_HUMAN6.066e-1448.75UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN7.922e-1448.75UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RHP23_SCHPO3.932e-1351.28UV excision repair protein rhp23 OS=Schizosaccharo... [more]
RD23B_RAT5.135e-1345.35UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE6.706e-1344.83UV excision repair protein RAD23 homolog B OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00814 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00814 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623723 ID=BQ623723; Name=BQ623723; organism=Citrus sinensis; type=EST; length=476bp
TGACTTCCTTCGGCTTATCAATGAACCTGTTCAAGGTGGTGAGGGGAATT
TGGGGGACCAGCTTGCTGGGTTAATGCCACAGTCAATACAAGTCACGCCC
GAAGAACGTGAAGCCATAGAACGTCTTGAGGCAATGGGCTTTGATCGAGC
AATTGTATTGGAGGTGTTCTTTGCCTGCAACAAGAATGAGGAACTTGCTG
CCAACTACCTTTTAGACCATATGCATGAGTTTGAGGATTGATTGAAAGGG
GAATAGAAAAGATTCAAGATGAAAATGATGGTTACTACCTTTGGACGGCA
TTTATTAAAAAATACCTCTAATTAGTTTCTTTCCCTTCTCATTTCTCCTC
GACTTCATTTGTTAAACAAAGTTCAGATATTCATGCTTTGGTATGTGTGG
AGAGTGAACAAGTAATGCAAGATGTAACATTCTTCAACTTCTCATTTAGG
AACCTAATGTTCATGGCAATTAGTTT
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