BQ623781

Overview
NameBQ623781
Unique NameBQ623781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 3
Query:   84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            + EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   17 RQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3
Query:   84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3
Query:   84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3
Query:   84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 8.455e-41
Identity = 79/94 (84.04%), Postives = 87/94 (92.55%), Query Frame = 3
Query:   90 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   20 EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 3
Query:   90 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            ++ + + GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   11 DKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 3
Query:   84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            + EE EF+ GPLSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   19 RLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 3
Query:   90 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371
            EE EF  GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME4.332e-4589.58Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE7.390e-4588.54Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN7.390e-4588.54Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN7.390e-4588.54Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_CAEEL8.455e-4184.04Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_DICDI1.350e-3879.79Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO7.174e-3269.79Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST4.661e-2355.32Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00872 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00872 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623781 ID=BQ623781; Name=BQ623781; organism=Citrus sinensis; type=EST; length=558bp
TCTCTAAAGTCTATACCCTGTCGTCGTTTGGGAGACTCGAGTGAAGATGA
GTAGAGCAATGGATGAGGATACCACCTGGTGGAAAGACTGAGGAAGAGGA
ATTCAACACTGGGCCACTTTCTGTTCTGATGATGAGTGTTAAAAATAACA
CTCAGGTGCTAATCAACTGCCGGAACAACAAGAAGCTTCTTGGCCGTGTG
AGGGCATTTGATCGACACTGCAACATGGTCCTTGAAAATGTCAGGGAGAT
GTGGACTGAGTTGCCCAAGACTGGGAAAGGAAAGAAGAAAGCTCTTCCGG
TCAACAAAGACAGATTCATCAGCAAGATGTTCCTTCGAGGGGACTCTGTA
ATCATTGTCCTTAGAAATCCCAAGTGATATAGCGGTCTTTAGAAATCATT
CTCGATGATGTTAGAACGGTTGTCTTGATATTTGTGGACTATGTTGCGTG
ACAGATCCATTTACATTTTTAGGGATTAACATGTTTGGTCTGAAAGTTTA
TTATAAAGTCAGTGACTTTTATTTGTCTCCAAACAAAAGAAAAAAAAATA
AAAAAAAA
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