BQ623781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45 Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 3 Query: 84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 + EEEEFNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 17 RQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45 Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3 Query: 84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 K EEEEFNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45 Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3 Query: 84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 K EEEEFNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 7.390e-45 Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 3 Query: 84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 K EEEEFNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 18 KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 8.455e-41 Identity = 79/94 (84.04%), Postives = 87/94 (92.55%), Query Frame = 3 Query: 90 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 E+EEFN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 20 EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38 Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 3 Query: 90 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 ++ + + GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP Sbjct: 11 DKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32 Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 3 Query: 84 KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 + EE EF+ GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P Sbjct: 19 RLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23 Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 3 Query: 90 EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 371 EE EF GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 22 EEFEFKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108 The following BLAST results are available for this feature:
BLAST of BQ623781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623781 ID=BQ623781; Name=BQ623781; organism=Citrus sinensis; type=EST; length=558bpback to top |